Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03352

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03351 and MPMX19_03352 are separated by 15 nucleotidesMPMX19_03352 and MPMX19_03353 are separated by 743 nucleotides MPMX19_03351: MPMX19_03351 - hypothetical protein, at 710,108 to 711,742 _03351 MPMX19_03352: MPMX19_03352 - hypothetical protein, at 711,758 to 713,119 _03352 MPMX19_03353: MPMX19_03353 - hypothetical protein, at 713,863 to 714,804 _03353 Position (kb) 711 712 713 714Strain fitness (log2 ratio) -2 -1 0 1 2 3at 710.920 kb on - strand, within MPMX19_03351at 711.036 kb on + strand, within MPMX19_03351at 711.036 kb on + strand, within MPMX19_03351at 711.037 kb on - strand, within MPMX19_03351at 711.037 kb on - strand, within MPMX19_03351at 711.213 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.435 kb on + strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.626 kb on - strandat 711.747 kb on - strandat 711.747 kb on - strandat 711.759 kb on + strandat 712.190 kb on - strand, within MPMX19_03352at 712.224 kb on - strand, within MPMX19_03352at 712.293 kb on + strand, within MPMX19_03352at 712.293 kb on + strand, within MPMX19_03352at 712.293 kb on + strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.521 kb on + strand, within MPMX19_03352at 712.623 kb on + strand, within MPMX19_03352at 712.623 kb on + strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.700 kb on + strand, within MPMX19_03352at 712.701 kb on - strand, within MPMX19_03352at 712.825 kb on + strand, within MPMX19_03352at 712.825 kb on + strand, within MPMX19_03352at 712.826 kb on - strand, within MPMX19_03352at 713.631 kb on - strandat 713.671 kb on - strandat 713.671 kb on - strandat 713.816 kb on + strandat 713.816 kb on + strandat 713.816 kb on + strandat 713.817 kb on - strandat 713.817 kb on - strandat 713.817 kb on - strandat 713.817 kb on - strandat 713.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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710,920 - MPMX19_03351 0.50 -0.3
711,036 + MPMX19_03351 0.57 -1.3
711,036 + MPMX19_03351 0.57 +1.0
711,037 - MPMX19_03351 0.57 -1.8
711,037 - MPMX19_03351 0.57 -0.6
711,213 + MPMX19_03351 0.68 +0.3
711,384 + MPMX19_03351 0.78 -1.6
711,384 + MPMX19_03351 0.78 +0.1
711,384 + MPMX19_03351 0.78 +2.0
711,384 + MPMX19_03351 0.78 -0.1
711,384 + MPMX19_03351 0.78 +1.0
711,384 + MPMX19_03351 0.78 +0.5
711,384 + MPMX19_03351 0.78 -0.0
711,384 + MPMX19_03351 0.78 -0.9
711,384 + MPMX19_03351 0.78 -0.2
711,384 + MPMX19_03351 0.78 -0.3
711,384 + MPMX19_03351 0.78 -1.0
711,384 + MPMX19_03351 0.78 -0.5
711,384 + MPMX19_03351 0.78 -1.5
711,384 + MPMX19_03351 0.78 -1.0
711,384 + MPMX19_03351 0.78 -1.5
711,384 + MPMX19_03351 0.78 +0.5
711,385 - MPMX19_03351 0.78 -1.8
711,385 - MPMX19_03351 0.78 +2.4
711,385 - MPMX19_03351 0.78 -0.7
711,385 - MPMX19_03351 0.78 -0.0
711,385 - MPMX19_03351 0.78 +0.9
711,385 - MPMX19_03351 0.78 -0.5
711,385 - MPMX19_03351 0.78 +0.3
711,385 - MPMX19_03351 0.78 +0.5
711,385 - MPMX19_03351 0.78 -2.3
711,385 - MPMX19_03351 0.78 +0.5
711,435 + MPMX19_03351 0.81 -0.2
711,436 - MPMX19_03351 0.81 +1.2
711,436 - MPMX19_03351 0.81 -0.3
711,436 - MPMX19_03351 0.81 -0.0
711,436 - MPMX19_03351 0.81 +0.9
711,626 - +0.3
711,747 - +1.4
711,747 - -0.9
711,759 + -0.5
712,190 - MPMX19_03352 0.32 +0.5
712,224 - MPMX19_03352 0.34 -1.9
712,293 + MPMX19_03352 0.39 -1.8
712,293 + MPMX19_03352 0.39 +0.8
712,293 + MPMX19_03352 0.39 +0.1
712,294 - MPMX19_03352 0.39 +1.3
712,294 - MPMX19_03352 0.39 -0.5
712,294 - MPMX19_03352 0.39 +0.1
712,294 - MPMX19_03352 0.39 +0.5
712,294 - MPMX19_03352 0.39 -0.2
712,521 + MPMX19_03352 0.56 +1.5
712,623 + MPMX19_03352 0.64 -0.2
712,623 + MPMX19_03352 0.64 -0.0
712,624 - MPMX19_03352 0.64 +1.3
712,624 - MPMX19_03352 0.64 -0.1
712,624 - MPMX19_03352 0.64 +0.2
712,624 - MPMX19_03352 0.64 +0.7
712,624 - MPMX19_03352 0.64 -0.4
712,700 + MPMX19_03352 0.69 -0.7
712,701 - MPMX19_03352 0.69 +2.1
712,825 + MPMX19_03352 0.78 -0.3
712,825 + MPMX19_03352 0.78 +1.2
712,826 - MPMX19_03352 0.78 +3.4
713,631 - +1.3
713,671 - +0.7
713,671 - -1.0
713,816 + -0.5
713,816 + -0.8
713,816 + +0.8
713,817 - -0.2
713,817 - -0.0
713,817 - -2.5
713,817 - +1.0
713,817 - +0.9

Or see this region's nucleotide sequence