Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00554

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00553 and MPMX19_00554 are separated by 144 nucleotidesMPMX19_00554 and MPMX19_00555 are separated by 161 nucleotidesMPMX19_00555 and MPMX19_00556 overlap by 4 nucleotides MPMX19_00553: MPMX19_00553 - Sensor histidine kinase RcsC, at 567,454 to 569,511 _00553 MPMX19_00554: MPMX19_00554 - 4,5-DOPA dioxygenase extradiol, at 569,656 to 570,459 _00554 MPMX19_00555: MPMX19_00555 - ATP synthase subunit b, at 570,621 to 571,100 _00555 MPMX19_00556: MPMX19_00556 - ATP synthase subunit b, at 571,097 to 571,747 _00556 Position (kb) 569 570 571Strain fitness (log2 ratio) -2 -1 0 1 2at 568.832 kb on + strand, within MPMX19_00553at 568.832 kb on + strand, within MPMX19_00553at 568.832 kb on + strand, within MPMX19_00553at 568.832 kb on + strand, within MPMX19_00553at 568.832 kb on + strand, within MPMX19_00553at 568.833 kb on - strand, within MPMX19_00553at 568.833 kb on - strand, within MPMX19_00553at 568.833 kb on - strand, within MPMX19_00553at 568.833 kb on - strand, within MPMX19_00553at 568.833 kb on - strand, within MPMX19_00553at 568.833 kb on - strand, within MPMX19_00553at 568.919 kb on + strand, within MPMX19_00553at 568.919 kb on + strand, within MPMX19_00553at 568.919 kb on + strand, within MPMX19_00553at 568.920 kb on - strand, within MPMX19_00553at 568.920 kb on - strand, within MPMX19_00553at 568.920 kb on - strand, within MPMX19_00553at 568.950 kb on + strand, within MPMX19_00553at 568.951 kb on - strand, within MPMX19_00553at 568.951 kb on - strand, within MPMX19_00553at 569.114 kb on + strand, within MPMX19_00553at 569.114 kb on + strand, within MPMX19_00553at 569.114 kb on + strand, within MPMX19_00553at 569.114 kb on + strand, within MPMX19_00553at 569.115 kb on - strand, within MPMX19_00553at 569.115 kb on - strand, within MPMX19_00553at 569.252 kb on + strand, within MPMX19_00553at 569.252 kb on + strand, within MPMX19_00553at 569.252 kb on + strand, within MPMX19_00553at 569.252 kb on + strand, within MPMX19_00553at 569.253 kb on - strand, within MPMX19_00553at 569.253 kb on - strand, within MPMX19_00553at 569.253 kb on - strand, within MPMX19_00553at 569.253 kb on - strand, within MPMX19_00553at 569.253 kb on - strand, within MPMX19_00553at 569.369 kb on + strandat 569.369 kb on + strandat 569.369 kb on + strandat 569.369 kb on + strandat 569.369 kb on + strandat 569.370 kb on - strandat 569.370 kb on - strandat 569.599 kb on + strandat 569.599 kb on + strandat 569.599 kb on + strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.600 kb on - strandat 569.702 kb on + strandat 569.702 kb on + strandat 569.702 kb on + strandat 569.702 kb on + strandat 569.702 kb on + strandat 569.964 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.104 kb on + strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.105 kb on - strand, within MPMX19_00554at 570.218 kb on + strand, within MPMX19_00554at 570.218 kb on + strand, within MPMX19_00554at 570.219 kb on - strand, within MPMX19_00554at 570.251 kb on + strand, within MPMX19_00554at 570.252 kb on - strand, within MPMX19_00554at 570.252 kb on - strand, within MPMX19_00554at 570.252 kb on - strand, within MPMX19_00554

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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568,832 + MPMX19_00553 0.67 +1.1
568,832 + MPMX19_00553 0.67 -0.0
568,832 + MPMX19_00553 0.67 -1.3
568,832 + MPMX19_00553 0.67 -0.5
568,832 + MPMX19_00553 0.67 +0.1
568,833 - MPMX19_00553 0.67 -0.8
568,833 - MPMX19_00553 0.67 +1.1
568,833 - MPMX19_00553 0.67 -0.6
568,833 - MPMX19_00553 0.67 -0.0
568,833 - MPMX19_00553 0.67 -1.8
568,833 - MPMX19_00553 0.67 -1.6
568,919 + MPMX19_00553 0.71 +0.5
568,919 + MPMX19_00553 0.71 +0.2
568,919 + MPMX19_00553 0.71 +0.0
568,920 - MPMX19_00553 0.71 -0.1
568,920 - MPMX19_00553 0.71 -1.5
568,920 - MPMX19_00553 0.71 +1.2
568,950 + MPMX19_00553 0.73 +0.3
568,951 - MPMX19_00553 0.73 -1.6
568,951 - MPMX19_00553 0.73 +0.8
569,114 + MPMX19_00553 0.81 +0.9
569,114 + MPMX19_00553 0.81 +0.2
569,114 + MPMX19_00553 0.81 +1.0
569,114 + MPMX19_00553 0.81 +0.1
569,115 - MPMX19_00553 0.81 -1.0
569,115 - MPMX19_00553 0.81 -0.0
569,252 + MPMX19_00553 0.87 -0.5
569,252 + MPMX19_00553 0.87 +0.1
569,252 + MPMX19_00553 0.87 -0.6
569,252 + MPMX19_00553 0.87 -1.2
569,253 - MPMX19_00553 0.87 -0.3
569,253 - MPMX19_00553 0.87 -0.4
569,253 - MPMX19_00553 0.87 +0.4
569,253 - MPMX19_00553 0.87 -0.9
569,253 - MPMX19_00553 0.87 +0.4
569,369 + +0.3
569,369 + +1.1
569,369 + -0.0
569,369 + +0.3
569,369 + -0.5
569,370 - -1.0
569,370 - -0.5
569,599 + -0.5
569,599 + -1.8
569,599 + -0.1
569,600 - -0.0
569,600 - +0.3
569,600 - +0.2
569,600 - -0.0
569,600 - -0.1
569,600 - +1.0
569,600 - -0.3
569,600 - +0.5
569,600 - +0.1
569,600 - +0.4
569,600 - -0.5
569,600 - -0.5
569,600 - -0.3
569,702 + +1.2
569,702 + -0.8
569,702 + +0.3
569,702 + -0.2
569,702 + -0.9
569,964 + MPMX19_00554 0.38 -0.7
570,104 + MPMX19_00554 0.56 -0.9
570,104 + MPMX19_00554 0.56 -1.5
570,104 + MPMX19_00554 0.56 +1.3
570,104 + MPMX19_00554 0.56 -0.8
570,104 + MPMX19_00554 0.56 +0.8
570,104 + MPMX19_00554 0.56 +1.1
570,104 + MPMX19_00554 0.56 +0.9
570,105 - MPMX19_00554 0.56 -1.5
570,105 - MPMX19_00554 0.56 +0.1
570,105 - MPMX19_00554 0.56 +0.0
570,105 - MPMX19_00554 0.56 +0.6
570,105 - MPMX19_00554 0.56 +0.1
570,105 - MPMX19_00554 0.56 -0.5
570,105 - MPMX19_00554 0.56 +0.5
570,105 - MPMX19_00554 0.56 -1.0
570,105 - MPMX19_00554 0.56 +0.3
570,218 + MPMX19_00554 0.70 +0.3
570,218 + MPMX19_00554 0.70 -0.5
570,219 - MPMX19_00554 0.70 +2.1
570,251 + MPMX19_00554 0.74 +0.2
570,252 - MPMX19_00554 0.74 -1.3
570,252 - MPMX19_00554 0.74 +1.3
570,252 - MPMX19_00554 0.74 +0.5

Or see this region's nucleotide sequence