Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06963

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06961 and MPMX19_06962 overlap by 4 nucleotidesMPMX19_06962 and MPMX19_06963 are separated by 38 nucleotidesMPMX19_06963 and MPMX19_06964 are separated by 160 nucleotides MPMX19_06961: MPMX19_06961 - Acetyl-CoA:oxalate CoA-transferase, at 237,901 to 239,151 _06961 MPMX19_06962: MPMX19_06962 - hypothetical protein, at 239,148 to 240,014 _06962 MPMX19_06963: MPMX19_06963 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 240,053 to 241,531 _06963 MPMX19_06964: MPMX19_06964 - HTH-type transcriptional regulator KipR, at 241,692 to 242,456 _06964 Position (kb) 240 241 242Strain fitness (log2 ratio) -2 -1 0 1 2at 239.073 kb on + strandat 239.074 kb on - strandat 239.074 kb on - strandat 239.203 kb on + strandat 239.203 kb on + strandat 239.543 kb on + strand, within MPMX19_06962at 239.543 kb on + strand, within MPMX19_06962at 239.647 kb on + strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 240.120 kb on + strandat 240.120 kb on + strandat 240.120 kb on + strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.172 kb on - strandat 240.207 kb on + strand, within MPMX19_06963at 240.252 kb on + strand, within MPMX19_06963at 240.252 kb on + strand, within MPMX19_06963at 240.252 kb on + strand, within MPMX19_06963at 240.451 kb on - strand, within MPMX19_06963at 240.451 kb on - strand, within MPMX19_06963at 240.451 kb on - strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 241.117 kb on - strand, within MPMX19_06963at 241.117 kb on - strand, within MPMX19_06963at 241.117 kb on - strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.194 kb on + strand, within MPMX19_06963at 241.194 kb on + strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.521 kb on + strandat 241.521 kb on + strandat 241.521 kb on + strandat 241.521 kb on + strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.720 kb on - strandat 241.720 kb on - strandat 241.866 kb on + strand, within MPMX19_06964at 241.866 kb on + strand, within MPMX19_06964at 241.867 kb on - strand, within MPMX19_06964at 241.867 kb on - strand, within MPMX19_06964at 241.915 kb on - strand, within MPMX19_06964at 241.915 kb on - strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 242.454 kb on + strandat 242.454 kb on + strandat 242.454 kb on + strandat 242.455 kb on - strandat 242.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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239,073 + -0.4
239,074 - +0.1
239,074 - +0.8
239,203 + -0.0
239,203 + -1.0
239,543 + MPMX19_06962 0.46 +1.6
239,543 + MPMX19_06962 0.46 -0.2
239,647 + MPMX19_06962 0.58 -1.8
239,648 - MPMX19_06962 0.58 -1.8
239,648 - MPMX19_06962 0.58 -1.0
239,648 - MPMX19_06962 0.58 -1.4
239,904 + MPMX19_06962 0.87 +0.1
239,904 + MPMX19_06962 0.87 -1.2
239,904 + MPMX19_06962 0.87 +1.6
239,904 + MPMX19_06962 0.87 -2.4
239,904 + MPMX19_06962 0.87 -0.0
239,904 + MPMX19_06962 0.87 +1.0
239,904 + MPMX19_06962 0.87 +0.7
239,905 - MPMX19_06962 0.87 +1.2
239,905 - MPMX19_06962 0.87 +0.1
239,905 - MPMX19_06962 0.87 +0.2
239,905 - MPMX19_06962 0.87 -0.2
239,905 - MPMX19_06962 0.87 -2.2
240,120 + +1.6
240,120 + -0.3
240,120 + -0.7
240,121 - -0.2
240,121 - -2.0
240,121 - +1.6
240,121 - -0.4
240,121 - +0.6
240,172 - -0.8
240,207 + MPMX19_06963 0.10 -1.4
240,252 + MPMX19_06963 0.13 +1.2
240,252 + MPMX19_06963 0.13 -0.2
240,252 + MPMX19_06963 0.13 +0.1
240,451 - MPMX19_06963 0.27 +0.7
240,451 - MPMX19_06963 0.27 -0.2
240,451 - MPMX19_06963 0.27 +0.8
240,996 + MPMX19_06963 0.64 +1.2
240,996 + MPMX19_06963 0.64 -0.8
240,996 + MPMX19_06963 0.64 -1.7
240,996 + MPMX19_06963 0.64 -0.4
240,997 - MPMX19_06963 0.64 +0.6
240,997 - MPMX19_06963 0.64 +0.2
240,997 - MPMX19_06963 0.64 -0.1
240,997 - MPMX19_06963 0.64 -0.2
241,117 - MPMX19_06963 0.72 -0.1
241,117 - MPMX19_06963 0.72 -0.4
241,117 - MPMX19_06963 0.72 -0.4
241,125 + MPMX19_06963 0.72 -0.4
241,125 + MPMX19_06963 0.72 -0.8
241,125 + MPMX19_06963 0.72 -0.4
241,125 + MPMX19_06963 0.72 +0.6
241,125 + MPMX19_06963 0.72 +0.4
241,125 + MPMX19_06963 0.72 -0.2
241,125 + MPMX19_06963 0.72 -1.8
241,125 + MPMX19_06963 0.72 -0.2
241,125 + MPMX19_06963 0.72 -1.9
241,125 + MPMX19_06963 0.72 -0.7
241,125 + MPMX19_06963 0.72 -0.7
241,125 + MPMX19_06963 0.72 -1.4
241,126 - MPMX19_06963 0.73 -1.3
241,126 - MPMX19_06963 0.73 +0.1
241,126 - MPMX19_06963 0.73 -0.2
241,126 - MPMX19_06963 0.73 -2.0
241,126 - MPMX19_06963 0.73 +0.3
241,126 - MPMX19_06963 0.73 -1.6
241,126 - MPMX19_06963 0.73 +1.2
241,126 - MPMX19_06963 0.73 -0.5
241,126 - MPMX19_06963 0.73 +0.2
241,191 + MPMX19_06963 0.77 -0.4
241,191 + MPMX19_06963 0.77 -0.5
241,191 + MPMX19_06963 0.77 -0.1
241,191 + MPMX19_06963 0.77 -0.2
241,192 - MPMX19_06963 0.77 -0.0
241,192 - MPMX19_06963 0.77 -0.8
241,192 - MPMX19_06963 0.77 +1.1
241,192 - MPMX19_06963 0.77 -0.8
241,192 - MPMX19_06963 0.77 -0.1
241,192 - MPMX19_06963 0.77 -1.0
241,194 + MPMX19_06963 0.77 -0.5
241,194 + MPMX19_06963 0.77 -0.4
241,195 - MPMX19_06963 0.77 +1.2
241,195 - MPMX19_06963 0.77 -0.4
241,195 - MPMX19_06963 0.77 +1.2
241,195 - MPMX19_06963 0.77 -2.6
241,195 - MPMX19_06963 0.77 -1.8
241,195 - MPMX19_06963 0.77 +1.6
241,521 + -1.0
241,521 + +0.6
241,521 + -1.6
241,521 + +0.6
241,522 - -1.6
241,522 - +0.8
241,522 - +0.6
241,522 - +0.4
241,522 - -0.4
241,522 - +0.6
241,522 - -0.8
241,522 - -1.8
241,720 - -0.7
241,720 - -0.1
241,866 + MPMX19_06964 0.23 +1.6
241,866 + MPMX19_06964 0.23 -1.8
241,867 - MPMX19_06964 0.23 +0.2
241,867 - MPMX19_06964 0.23 +0.2
241,915 - MPMX19_06964 0.29 +0.2
241,915 - MPMX19_06964 0.29 -2.2
241,980 + MPMX19_06964 0.38 -1.0
241,980 + MPMX19_06964 0.38 -0.7
241,980 + MPMX19_06964 0.38 -0.2
241,980 + MPMX19_06964 0.38 +0.3
241,981 - MPMX19_06964 0.38 +0.7
241,981 - MPMX19_06964 0.38 -0.1
241,981 - MPMX19_06964 0.38 -2.0
241,981 - MPMX19_06964 0.38 +0.5
242,454 + -0.4
242,454 + -0.1
242,454 + +1.8
242,455 - +0.2
242,455 - -0.4

Or see this region's nucleotide sequence