Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06822

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06820 and MPMX19_06821 overlap by 8 nucleotidesMPMX19_06821 and MPMX19_06822 are separated by 2 nucleotidesMPMX19_06822 and MPMX19_06823 are separated by 45 nucleotides MPMX19_06820: MPMX19_06820 - hypothetical protein, at 85,385 to 85,783 _06820 MPMX19_06821: MPMX19_06821 - (E)-2-((N-methylformamido)methylene)succinate hydrolase, at 85,776 to 86,603 _06821 MPMX19_06822: MPMX19_06822 - Flavin-dependent trigonelline monooxygenase, oxygenase component, at 86,606 to 87,721 _06822 MPMX19_06823: MPMX19_06823 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 87,767 to 89,278 _06823 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.657 kb on - strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 86.051 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.155 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.501 kb on - strand, within MPMX19_06821at 86.557 kb on + strandat 86.557 kb on + strandat 86.799 kb on + strand, within MPMX19_06822at 86.800 kb on - strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.898 kb on + strand, within MPMX19_06822at 86.971 kb on - strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.268 kb on - strand, within MPMX19_06822at 87.268 kb on - strand, within MPMX19_06822at 87.285 kb on + strand, within MPMX19_06822at 87.285 kb on + strand, within MPMX19_06822at 87.333 kb on + strand, within MPMX19_06822at 87.333 kb on + strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.384 kb on + strand, within MPMX19_06822at 87.385 kb on - strand, within MPMX19_06822at 87.385 kb on - strand, within MPMX19_06822at 87.390 kb on + strand, within MPMX19_06822at 87.876 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.912 kb on + strandat 87.913 kb on - strandat 87.913 kb on - strandat 87.913 kb on - strandat 87.913 kb on - strandat 87.927 kb on + strand, within MPMX19_06823at 87.927 kb on + strand, within MPMX19_06823at 87.928 kb on - strand, within MPMX19_06823at 87.928 kb on - strand, within MPMX19_06823at 87.928 kb on - strand, within MPMX19_06823at 88.021 kb on - strand, within MPMX19_06823at 88.155 kb on + strand, within MPMX19_06823at 88.155 kb on + strand, within MPMX19_06823at 88.156 kb on - strand, within MPMX19_06823at 88.156 kb on - strand, within MPMX19_06823at 88.156 kb on - strand, within MPMX19_06823at 88.156 kb on - strand, within MPMX19_06823at 88.156 kb on - strand, within MPMX19_06823at 88.239 kb on + strand, within MPMX19_06823at 88.239 kb on + strand, within MPMX19_06823at 88.239 kb on + strand, within MPMX19_06823at 88.239 kb on + strand, within MPMX19_06823at 88.239 kb on + strand, within MPMX19_06823at 88.239 kb on + strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.240 kb on - strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.362 kb on + strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823at 88.363 kb on - strand, within MPMX19_06823

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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85,656 + MPMX19_06820 0.68 +0.6
85,656 + MPMX19_06820 0.68 -0.5
85,656 + MPMX19_06820 0.68 -0.0
85,656 + MPMX19_06820 0.68 -0.9
85,656 + MPMX19_06820 0.68 -1.8
85,656 + MPMX19_06820 0.68 -0.4
85,657 - MPMX19_06820 0.68 -0.1
85,722 + MPMX19_06820 0.84 +0.2
85,722 + MPMX19_06820 0.84 +0.9
85,722 + MPMX19_06820 0.84 -0.2
85,722 + MPMX19_06820 0.84 -1.4
85,722 + MPMX19_06820 0.84 -0.8
85,723 - MPMX19_06820 0.85 +0.4
85,723 - MPMX19_06820 0.85 -0.7
85,723 - MPMX19_06820 0.85 +0.6
86,051 - MPMX19_06821 0.33 -0.3
86,086 - MPMX19_06821 0.37 +1.8
86,086 - MPMX19_06821 0.37 -0.1
86,086 - MPMX19_06821 0.37 -0.0
86,155 + MPMX19_06821 0.46 +0.2
86,500 + MPMX19_06821 0.87 +1.6
86,500 + MPMX19_06821 0.87 +0.1
86,500 + MPMX19_06821 0.87 -1.0
86,500 + MPMX19_06821 0.87 -0.4
86,501 - MPMX19_06821 0.88 -0.4
86,557 + +0.6
86,557 + -0.8
86,799 + MPMX19_06822 0.17 -1.8
86,800 - MPMX19_06822 0.17 +1.1
86,871 + MPMX19_06822 0.24 +0.6
86,871 + MPMX19_06822 0.24 +0.0
86,871 + MPMX19_06822 0.24 +0.7
86,871 + MPMX19_06822 0.24 +1.2
86,871 + MPMX19_06822 0.24 -0.7
86,871 + MPMX19_06822 0.24 +0.3
86,871 + MPMX19_06822 0.24 +0.7
86,871 + MPMX19_06822 0.24 -0.4
86,872 - MPMX19_06822 0.24 -1.8
86,872 - MPMX19_06822 0.24 +1.2
86,872 - MPMX19_06822 0.24 -0.4
86,872 - MPMX19_06822 0.24 +1.1
86,872 - MPMX19_06822 0.24 -1.0
86,872 - MPMX19_06822 0.24 -0.9
86,898 + MPMX19_06822 0.26 -1.8
86,971 - MPMX19_06822 0.33 +0.6
87,018 + MPMX19_06822 0.37 -0.0
87,018 + MPMX19_06822 0.37 -1.0
87,018 + MPMX19_06822 0.37 -1.0
87,018 + MPMX19_06822 0.37 +0.4
87,018 + MPMX19_06822 0.37 -0.8
87,019 - MPMX19_06822 0.37 +1.9
87,019 - MPMX19_06822 0.37 -0.1
87,019 - MPMX19_06822 0.37 -0.4
87,019 - MPMX19_06822 0.37 -0.4
87,268 - MPMX19_06822 0.59 +0.3
87,268 - MPMX19_06822 0.59 +0.9
87,285 + MPMX19_06822 0.61 -0.2
87,285 + MPMX19_06822 0.61 -0.7
87,333 + MPMX19_06822 0.65 +1.5
87,333 + MPMX19_06822 0.65 -0.1
87,334 - MPMX19_06822 0.65 -1.1
87,334 - MPMX19_06822 0.65 +0.2
87,334 - MPMX19_06822 0.65 -0.6
87,334 - MPMX19_06822 0.65 +0.7
87,384 + MPMX19_06822 0.70 +0.1
87,385 - MPMX19_06822 0.70 +1.3
87,385 - MPMX19_06822 0.70 -0.2
87,390 + MPMX19_06822 0.70 +0.3
87,876 + +0.2
87,912 + -1.3
87,912 + -0.0
87,912 + -0.2
87,912 + -0.4
87,912 + -0.9
87,912 + +1.6
87,912 + +0.2
87,912 + +0.7
87,912 + -0.4
87,913 - -0.0
87,913 - -0.5
87,913 - -2.0
87,913 - +0.3
87,927 + MPMX19_06823 0.11 -0.4
87,927 + MPMX19_06823 0.11 -0.5
87,928 - MPMX19_06823 0.11 +4.0
87,928 - MPMX19_06823 0.11 +0.1
87,928 - MPMX19_06823 0.11 +1.2
88,021 - MPMX19_06823 0.17 -0.2
88,155 + MPMX19_06823 0.26 +0.4
88,155 + MPMX19_06823 0.26 -1.2
88,156 - MPMX19_06823 0.26 +0.9
88,156 - MPMX19_06823 0.26 +0.3
88,156 - MPMX19_06823 0.26 -1.4
88,156 - MPMX19_06823 0.26 +0.2
88,156 - MPMX19_06823 0.26 +2.4
88,239 + MPMX19_06823 0.31 -2.8
88,239 + MPMX19_06823 0.31 +0.6
88,239 + MPMX19_06823 0.31 -1.0
88,239 + MPMX19_06823 0.31 -0.8
88,239 + MPMX19_06823 0.31 -0.8
88,239 + MPMX19_06823 0.31 -0.7
88,240 - MPMX19_06823 0.31 +0.4
88,240 - MPMX19_06823 0.31 +0.7
88,240 - MPMX19_06823 0.31 -0.8
88,240 - MPMX19_06823 0.31 +1.2
88,240 - MPMX19_06823 0.31 +0.3
88,240 - MPMX19_06823 0.31 -1.2
88,240 - MPMX19_06823 0.31 +0.9
88,240 - MPMX19_06823 0.31 -0.5
88,240 - MPMX19_06823 0.31 -0.3
88,240 - MPMX19_06823 0.31 +0.9
88,362 + MPMX19_06823 0.39 +0.2
88,362 + MPMX19_06823 0.39 -0.3
88,362 + MPMX19_06823 0.39 -0.8
88,362 + MPMX19_06823 0.39 -0.4
88,363 - MPMX19_06823 0.39 +2.4
88,363 - MPMX19_06823 0.39 +0.3
88,363 - MPMX19_06823 0.39 +1.1
88,363 - MPMX19_06823 0.39 +0.4
88,363 - MPMX19_06823 0.39 -1.0

Or see this region's nucleotide sequence