Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06227

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06226 and MPMX19_06227 are separated by 48 nucleotidesMPMX19_06227 and MPMX19_06228 are separated by 42 nucleotides MPMX19_06226: MPMX19_06226 - Xylose transport system permease protein XylH, at 411,886 to 413,085 _06226 MPMX19_06227: MPMX19_06227 - L-arabinose 1-dehydrogenase (NAD(P)(+)), at 413,134 to 414,072 _06227 MPMX19_06228: MPMX19_06228 - hypothetical protein, at 414,115 to 415,695 _06228 Position (kb) 413 414 415Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 412.264 kb on + strand, within MPMX19_06226at 412.265 kb on - strand, within MPMX19_06226at 412.276 kb on + strand, within MPMX19_06226at 412.277 kb on - strand, within MPMX19_06226at 412.277 kb on - strand, within MPMX19_06226at 412.591 kb on + strand, within MPMX19_06226at 412.591 kb on + strand, within MPMX19_06226at 412.591 kb on + strand, within MPMX19_06226at 412.591 kb on + strand, within MPMX19_06226at 412.591 kb on + strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.592 kb on - strand, within MPMX19_06226at 412.615 kb on + strand, within MPMX19_06226at 412.615 kb on + strand, within MPMX19_06226at 412.615 kb on + strand, within MPMX19_06226at 412.615 kb on + strand, within MPMX19_06226at 412.615 kb on + strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.616 kb on - strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.666 kb on + strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.667 kb on - strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.708 kb on + strand, within MPMX19_06226at 412.709 kb on - strand, within MPMX19_06226at 412.709 kb on - strand, within MPMX19_06226at 412.709 kb on - strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.774 kb on + strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 412.775 kb on - strand, within MPMX19_06226at 413.065 kb on + strandat 413.065 kb on + strandat 413.065 kb on + strandat 413.065 kb on + strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.066 kb on - strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.127 kb on + strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.128 kb on - strandat 413.190 kb on + strandat 413.190 kb on + strandat 413.190 kb on + strandat 413.190 kb on + strandat 413.191 kb on - strandat 413.191 kb on - strandat 413.909 kb on + strand, within MPMX19_06227at 413.938 kb on + strand, within MPMX19_06227at 413.938 kb on + strand, within MPMX19_06227at 413.938 kb on + strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.939 kb on - strand, within MPMX19_06227at 413.950 kb on + strand, within MPMX19_06227at 413.950 kb on + strand, within MPMX19_06227at 413.950 kb on + strand, within MPMX19_06227at 413.950 kb on + strand, within MPMX19_06227at 413.950 kb on + strand, within MPMX19_06227at 413.950 kb on + strand, within MPMX19_06227at 413.951 kb on - strand, within MPMX19_06227at 413.951 kb on - strand, within MPMX19_06227at 414.070 kb on + strandat 414.070 kb on + strandat 414.070 kb on + strandat 414.070 kb on + strandat 414.071 kb on - strandat 414.071 kb on - strandat 414.071 kb on - strandat 414.071 kb on - strandat 414.098 kb on + strandat 414.098 kb on + strandat 414.099 kb on - strandat 414.488 kb on - strand, within MPMX19_06228at 414.488 kb on - strand, within MPMX19_06228

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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412,264 + MPMX19_06226 0.32 +0.5
412,265 - MPMX19_06226 0.32 +0.4
412,276 + MPMX19_06226 0.33 +1.3
412,277 - MPMX19_06226 0.33 +0.4
412,277 - MPMX19_06226 0.33 +0.8
412,591 + MPMX19_06226 0.59 -1.4
412,591 + MPMX19_06226 0.59 +0.6
412,591 + MPMX19_06226 0.59 +1.4
412,591 + MPMX19_06226 0.59 +0.2
412,591 + MPMX19_06226 0.59 -0.7
412,592 - MPMX19_06226 0.59 +0.6
412,592 - MPMX19_06226 0.59 -0.4
412,592 - MPMX19_06226 0.59 +0.8
412,592 - MPMX19_06226 0.59 +0.4
412,592 - MPMX19_06226 0.59 -0.7
412,592 - MPMX19_06226 0.59 +0.9
412,592 - MPMX19_06226 0.59 -1.0
412,592 - MPMX19_06226 0.59 -2.0
412,592 - MPMX19_06226 0.59 -0.1
412,592 - MPMX19_06226 0.59 +2.9
412,615 + MPMX19_06226 0.61 -0.4
412,615 + MPMX19_06226 0.61 -0.5
412,615 + MPMX19_06226 0.61 -1.3
412,615 + MPMX19_06226 0.61 -0.4
412,615 + MPMX19_06226 0.61 -0.8
412,616 - MPMX19_06226 0.61 -1.0
412,616 - MPMX19_06226 0.61 +0.9
412,616 - MPMX19_06226 0.61 -2.0
412,616 - MPMX19_06226 0.61 +0.3
412,616 - MPMX19_06226 0.61 +0.0
412,616 - MPMX19_06226 0.61 -0.7
412,616 - MPMX19_06226 0.61 -2.0
412,616 - MPMX19_06226 0.61 +0.5
412,616 - MPMX19_06226 0.61 -0.2
412,616 - MPMX19_06226 0.61 +0.6
412,616 - MPMX19_06226 0.61 +0.2
412,666 + MPMX19_06226 0.65 -1.4
412,666 + MPMX19_06226 0.65 +0.8
412,666 + MPMX19_06226 0.65 -0.8
412,666 + MPMX19_06226 0.65 -0.2
412,666 + MPMX19_06226 0.65 +0.6
412,666 + MPMX19_06226 0.65 -0.4
412,666 + MPMX19_06226 0.65 -0.9
412,666 + MPMX19_06226 0.65 -1.4
412,667 - MPMX19_06226 0.65 -0.1
412,667 - MPMX19_06226 0.65 +1.2
412,667 - MPMX19_06226 0.65 -0.4
412,667 - MPMX19_06226 0.65 -0.7
412,667 - MPMX19_06226 0.65 -0.1
412,667 - MPMX19_06226 0.65 -1.9
412,667 - MPMX19_06226 0.65 -0.6
412,667 - MPMX19_06226 0.65 -1.8
412,667 - MPMX19_06226 0.65 -0.4
412,667 - MPMX19_06226 0.65 -0.6
412,667 - MPMX19_06226 0.65 -0.7
412,667 - MPMX19_06226 0.65 +0.4
412,667 - MPMX19_06226 0.65 +0.3
412,708 + MPMX19_06226 0.69 +1.6
412,708 + MPMX19_06226 0.69 -0.4
412,708 + MPMX19_06226 0.69 +0.2
412,708 + MPMX19_06226 0.69 -1.7
412,708 + MPMX19_06226 0.69 -1.2
412,708 + MPMX19_06226 0.69 -0.6
412,708 + MPMX19_06226 0.69 -0.2
412,709 - MPMX19_06226 0.69 +0.6
412,709 - MPMX19_06226 0.69 -0.9
412,709 - MPMX19_06226 0.69 -0.2
412,774 + MPMX19_06226 0.74 -0.4
412,774 + MPMX19_06226 0.74 +0.9
412,774 + MPMX19_06226 0.74 -1.0
412,774 + MPMX19_06226 0.74 +1.1
412,774 + MPMX19_06226 0.74 -0.4
412,774 + MPMX19_06226 0.74 -2.7
412,774 + MPMX19_06226 0.74 +1.0
412,774 + MPMX19_06226 0.74 +0.3
412,774 + MPMX19_06226 0.74 +1.0
412,774 + MPMX19_06226 0.74 +0.6
412,774 + MPMX19_06226 0.74 +0.6
412,774 + MPMX19_06226 0.74 -0.2
412,774 + MPMX19_06226 0.74 -0.2
412,774 + MPMX19_06226 0.74 -0.0
412,774 + MPMX19_06226 0.74 +0.2
412,775 - MPMX19_06226 0.74 -0.3
412,775 - MPMX19_06226 0.74 +1.0
412,775 - MPMX19_06226 0.74 -1.4
412,775 - MPMX19_06226 0.74 +0.6
412,775 - MPMX19_06226 0.74 -0.4
412,775 - MPMX19_06226 0.74 -1.0
412,775 - MPMX19_06226 0.74 -1.2
412,775 - MPMX19_06226 0.74 +0.8
412,775 - MPMX19_06226 0.74 -0.4
413,065 + +1.0
413,065 + -1.0
413,065 + +1.3
413,065 + -1.0
413,066 - +0.4
413,066 - +0.6
413,066 - -2.4
413,066 - +1.3
413,066 - -0.3
413,066 - +0.3
413,066 - +0.3
413,066 - +0.6
413,066 - +0.1
413,127 + -0.5
413,127 + +0.6
413,127 + +0.1
413,127 + -1.0
413,127 + +0.6
413,127 + -0.3
413,127 + -0.1
413,127 + +0.1
413,127 + -0.5
413,127 + -0.4
413,127 + +1.5
413,128 - +1.4
413,128 - +0.1
413,128 - +0.2
413,128 - -0.3
413,128 - -1.0
413,128 - +1.9
413,128 - -0.4
413,128 - +0.6
413,190 + -2.1
413,190 + +0.2
413,190 + +0.4
413,190 + -0.5
413,191 - +0.2
413,191 - -0.6
413,909 + MPMX19_06227 0.83 -1.0
413,938 + MPMX19_06227 0.86 -3.0
413,938 + MPMX19_06227 0.86 -1.0
413,938 + MPMX19_06227 0.86 +1.0
413,939 - MPMX19_06227 0.86 -0.7
413,939 - MPMX19_06227 0.86 +0.4
413,939 - MPMX19_06227 0.86 -0.4
413,939 - MPMX19_06227 0.86 -1.7
413,939 - MPMX19_06227 0.86 -0.4
413,939 - MPMX19_06227 0.86 +0.0
413,939 - MPMX19_06227 0.86 +0.2
413,939 - MPMX19_06227 0.86 -0.9
413,950 + MPMX19_06227 0.87 +0.6
413,950 + MPMX19_06227 0.87 -0.5
413,950 + MPMX19_06227 0.87 +0.4
413,950 + MPMX19_06227 0.87 -0.4
413,950 + MPMX19_06227 0.87 -1.7
413,950 + MPMX19_06227 0.87 -0.5
413,951 - MPMX19_06227 0.87 +0.3
413,951 - MPMX19_06227 0.87 +1.0
414,070 + -0.7
414,070 + +0.0
414,070 + +1.1
414,070 + -0.7
414,071 - -1.4
414,071 - +0.6
414,071 - +0.0
414,071 - -0.5
414,098 + -0.6
414,098 + -1.1
414,099 - -0.4
414,488 - MPMX19_06228 0.24 -0.8
414,488 - MPMX19_06228 0.24 -1.4

Or see this region's nucleotide sequence