Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04536 and MPMX19_04537 are separated by 46 nucleotides MPMX19_04537 and MPMX19_04538 are separated by 252 nucleotides MPMX19_04538 and MPMX19_04539 are separated by 92 nucleotides MPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides
MPMX19_04536: MPMX19_04536 - D-amino acid dehydrogenase 1, at 909,444 to 910,691
_04536
MPMX19_04537: MPMX19_04537 - 2-iminobutanoate/2-iminopropanoate deaminase, at 910,738 to 911,088
_04537
MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474
_04538
MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466
_04539
MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358
_04540
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.351 kb on + strand, within MPMX19_04536 at 910.351 kb on + strand, within MPMX19_04536 at 910.352 kb on - strand, within MPMX19_04536 at 910.534 kb on + strand, within MPMX19_04536 at 910.534 kb on + strand, within MPMX19_04536 at 910.534 kb on + strand, within MPMX19_04536 at 910.534 kb on + strand, within MPMX19_04536 at 910.534 kb on + strand, within MPMX19_04536 at 910.534 kb on + strand, within MPMX19_04536 at 910.535 kb on - strand, within MPMX19_04536 at 910.535 kb on - strand, within MPMX19_04536 at 910.535 kb on - strand, within MPMX19_04536 at 910.642 kb on + strand at 910.642 kb on + strand at 910.643 kb on - strand at 910.643 kb on - strand at 911.021 kb on + strand, within MPMX19_04537 at 911.022 kb on - strand, within MPMX19_04537 at 911.022 kb on - strand, within MPMX19_04537 at 911.073 kb on + strand at 911.073 kb on + strand at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.836 kb on + strand, within MPMX19_04538 at 911.837 kb on - strand, within MPMX19_04538 at 911.884 kb on + strand, within MPMX19_04538 at 911.899 kb on + strand, within MPMX19_04538 at 911.980 kb on + strand, within MPMX19_04538 at 911.981 kb on - strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.220 kb on + strand, within MPMX19_04538 at 912.220 kb on + strand, within MPMX19_04538 at 912.265 kb on + strand, within MPMX19_04538 at 912.265 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.364 kb on + strand at 912.364 kb on + strand at 912.364 kb on + strand at 912.365 kb on - strand at 912.365 kb on - strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.440 kb on - strand at 912.440 kb on - strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.473 kb on - strand at 912.473 kb on - strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.577 kb on + strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.642 kb on + strand at 912.642 kb on + strand at 912.642 kb on + strand at 913.362 kb on + strand, within MPMX19_04539 at 913.362 kb on + strand, within MPMX19_04539 at 913.363 kb on - strand, within MPMX19_04539 at 913.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 910,351 + MPMX19_04536 0.73 +1.4 910,351 + MPMX19_04536 0.73 -1.1 910,352 - MPMX19_04536 0.73 -0.4 910,534 + MPMX19_04536 0.87 -0.7 910,534 + MPMX19_04536 0.87 -1.2 910,534 + MPMX19_04536 0.87 +2.2 910,534 + MPMX19_04536 0.87 +1.6 910,534 + MPMX19_04536 0.87 +0.2 910,534 + MPMX19_04536 0.87 +0.3 910,535 - MPMX19_04536 0.87 -0.4 910,535 - MPMX19_04536 0.87 -0.4 910,535 - MPMX19_04536 0.87 -0.6 910,642 + +0.2 910,642 + -0.8 910,643 - +0.2 910,643 - +0.0 911,021 + MPMX19_04537 0.81 +1.0 911,022 - MPMX19_04537 0.81 -0.3 911,022 - MPMX19_04537 0.81 -0.4 911,073 + -0.9 911,073 + -0.1 911,671 + MPMX19_04538 0.29 -0.3 911,671 + MPMX19_04538 0.29 +1.5 911,671 + MPMX19_04538 0.29 -1.7 911,671 + MPMX19_04538 0.29 -1.1 911,671 + MPMX19_04538 0.29 -1.4 911,671 + MPMX19_04538 0.29 -0.7 911,671 + MPMX19_04538 0.29 +1.0 911,671 + MPMX19_04538 0.29 -0.7 911,671 + MPMX19_04538 0.29 -1.0 911,671 + MPMX19_04538 0.29 +0.0 911,672 - MPMX19_04538 0.29 -0.4 911,672 - MPMX19_04538 0.29 -2.6 911,672 - MPMX19_04538 0.29 +0.9 911,672 - MPMX19_04538 0.29 -0.8 911,672 - MPMX19_04538 0.29 -2.9 911,704 + MPMX19_04538 0.32 -0.1 911,704 + MPMX19_04538 0.32 -0.4 911,704 + MPMX19_04538 0.32 -0.5 911,705 - MPMX19_04538 0.32 +2.1 911,705 - MPMX19_04538 0.32 -0.5 911,705 - MPMX19_04538 0.32 +0.0 911,705 - MPMX19_04538 0.32 -1.4 911,836 + MPMX19_04538 0.44 +0.3 911,837 - MPMX19_04538 0.44 -0.3 911,884 + MPMX19_04538 0.48 -1.6 911,899 + MPMX19_04538 0.49 -1.2 911,980 + MPMX19_04538 0.56 -1.4 911,981 - MPMX19_04538 0.56 -1.4 912,031 + MPMX19_04538 0.61 -1.7 912,031 + MPMX19_04538 0.61 +0.6 912,031 + MPMX19_04538 0.61 -1.7 912,031 + MPMX19_04538 0.61 -1.4 912,031 + MPMX19_04538 0.61 -1.4 912,031 + MPMX19_04538 0.61 -1.7 912,032 - MPMX19_04538 0.61 -1.4 912,032 - MPMX19_04538 0.61 -0.7 912,032 - MPMX19_04538 0.61 -1.0 912,032 - MPMX19_04538 0.61 +1.0 912,032 - MPMX19_04538 0.61 +0.6 912,115 + MPMX19_04538 0.68 -0.0 912,115 + MPMX19_04538 0.68 +0.0 912,115 + MPMX19_04538 0.68 +1.5 912,115 + MPMX19_04538 0.68 -0.6 912,115 + MPMX19_04538 0.68 -1.6 912,115 + MPMX19_04538 0.68 -2.7 912,115 + MPMX19_04538 0.68 -0.1 912,115 + MPMX19_04538 0.68 +0.6 912,115 + MPMX19_04538 0.68 -2.4 912,115 + MPMX19_04538 0.68 -1.8 912,115 + MPMX19_04538 0.68 -1.0 912,115 + MPMX19_04538 0.68 -0.4 912,115 + MPMX19_04538 0.68 -0.1 912,115 + MPMX19_04538 0.68 +0.0 912,116 - MPMX19_04538 0.68 -0.1 912,116 - MPMX19_04538 0.68 +0.3 912,116 - MPMX19_04538 0.68 +0.0 912,116 - MPMX19_04538 0.68 -1.7 912,116 - MPMX19_04538 0.68 +1.0 912,116 - MPMX19_04538 0.68 -1.6 912,116 - MPMX19_04538 0.68 +0.5 912,116 - MPMX19_04538 0.68 -1.4 912,116 - MPMX19_04538 0.68 -0.2 912,116 - MPMX19_04538 0.68 +0.6 912,116 - MPMX19_04538 0.68 +1.5 912,116 - MPMX19_04538 0.68 +0.6 912,116 - MPMX19_04538 0.68 +0.5 912,116 - MPMX19_04538 0.68 +0.3 912,116 - MPMX19_04538 0.68 -0.6 912,116 - MPMX19_04538 0.68 +1.6 912,116 - MPMX19_04538 0.68 +0.6 912,184 + MPMX19_04538 0.74 -0.7 912,184 + MPMX19_04538 0.74 -0.0 912,184 + MPMX19_04538 0.74 -1.1 912,184 + MPMX19_04538 0.74 -0.6 912,184 + MPMX19_04538 0.74 +0.3 912,184 + MPMX19_04538 0.74 -0.4 912,184 + MPMX19_04538 0.74 -0.3 912,184 + MPMX19_04538 0.74 +1.2 912,184 + MPMX19_04538 0.74 -0.2 912,184 + MPMX19_04538 0.74 -1.6 912,184 + MPMX19_04538 0.74 +0.0 912,184 + MPMX19_04538 0.74 -0.7 912,184 + MPMX19_04538 0.74 -0.1 912,184 + MPMX19_04538 0.74 -0.3 912,184 + MPMX19_04538 0.74 +0.1 912,185 - MPMX19_04538 0.74 +0.3 912,185 - MPMX19_04538 0.74 -0.5 912,185 - MPMX19_04538 0.74 -2.2 912,185 - MPMX19_04538 0.74 -0.5 912,185 - MPMX19_04538 0.74 -2.0 912,185 - MPMX19_04538 0.74 +0.1 912,185 - MPMX19_04538 0.74 -1.7 912,185 - MPMX19_04538 0.74 -1.0 912,185 - MPMX19_04538 0.74 -0.1 912,185 - MPMX19_04538 0.74 +0.6 912,185 - MPMX19_04538 0.74 -0.7 912,185 - MPMX19_04538 0.74 -1.0 912,185 - MPMX19_04538 0.74 +0.6 912,185 - MPMX19_04538 0.74 -0.1 912,185 - MPMX19_04538 0.74 +0.3 912,185 - MPMX19_04538 0.74 -1.2 912,185 - MPMX19_04538 0.74 -1.0 912,185 - MPMX19_04538 0.74 +0.0 912,220 + MPMX19_04538 0.78 -0.7 912,220 + MPMX19_04538 0.78 -2.2 912,265 + MPMX19_04538 0.81 -1.4 912,265 + MPMX19_04538 0.81 -2.4 912,271 + MPMX19_04538 0.82 +0.4 912,271 + MPMX19_04538 0.82 +0.0 912,271 + MPMX19_04538 0.82 +0.0 912,271 + MPMX19_04538 0.82 -0.3 912,271 + MPMX19_04538 0.82 -1.7 912,271 + MPMX19_04538 0.82 -1.4 912,272 - MPMX19_04538 0.82 -0.3 912,272 - MPMX19_04538 0.82 -1.0 912,272 - MPMX19_04538 0.82 -0.4 912,272 - MPMX19_04538 0.82 +0.0 912,272 - MPMX19_04538 0.82 +1.2 912,272 - MPMX19_04538 0.82 +0.0 912,272 - MPMX19_04538 0.82 -1.6 912,272 - MPMX19_04538 0.82 -1.8 912,272 - MPMX19_04538 0.82 -0.2 912,272 - MPMX19_04538 0.82 -1.1 912,364 + +0.3 912,364 + -0.6 912,364 + +0.9 912,365 - +0.0 912,365 - -0.2 912,424 + -1.0 912,424 + +1.5 912,424 + -0.1 912,424 + +0.6 912,424 + +0.2 912,424 + +0.6 912,425 - +0.7 912,425 - +0.1 912,425 - +0.8 912,425 - -1.4 912,425 - +0.4 912,425 - +0.9 912,425 - -0.1 912,425 - -1.7 912,425 - +1.1 912,425 - -1.4 912,425 - -0.4 912,425 - +0.3 912,425 - -2.2 912,425 - -0.4 912,439 + +0.1 912,439 + -1.0 912,439 + +0.2 912,439 + +0.2 912,439 + -1.1 912,439 + -0.1 912,440 - -0.9 912,440 - +0.2 912,472 + -0.8 912,472 + -0.0 912,472 + +0.7 912,472 + +0.2 912,473 - -0.6 912,473 - +0.6 912,559 + -0.3 912,559 + -0.1 912,559 + -0.7 912,559 + -2.0 912,559 + -0.4 912,559 + +0.0 912,559 + -1.4 912,559 + -1.6 912,559 + +1.3 912,559 + -1.1 912,559 + -1.4 912,559 + -0.8 912,559 + -0.9 912,559 + +1.2 912,559 + +0.6 912,559 + -1.0 912,559 + +0.6 912,559 + +1.8 912,559 + +0.2 912,559 + -1.4 912,559 + +0.0 912,560 - +0.2 912,560 - +1.8 912,560 - +0.2 912,560 - -1.4 912,560 - -1.7 912,560 - -0.5 912,560 - -1.7 912,560 - -1.7 912,560 - -0.4 912,560 - +1.9 912,560 - -1.0 912,560 - +1.3 912,560 - +1.0 912,560 - +0.1 912,560 - -0.4 912,560 - -1.6 912,560 - +0.6 912,560 - -0.6 912,560 - +1.1 912,560 - +0.0 912,560 - +0.7 912,560 - +1.6 912,560 - +0.6 912,560 - -0.8 912,560 - -0.4 912,560 - +0.5 912,560 - +0.2 912,577 + -2.2 912,578 - -0.4 912,578 - +0.3 912,578 - +1.0 912,642 + -2.0 912,642 + -1.0 912,642 + -1.0 913,362 + MPMX19_04539 0.88 -0.4 913,362 + MPMX19_04539 0.88 +0.6 913,363 - MPMX19_04539 0.88 -1.4 913,423 - -0.2
Or see this region's nucleotide sequence