Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04430

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04429 and MPMX19_04430 are separated by 222 nucleotidesMPMX19_04430 and MPMX19_04431 are separated by 12 nucleotides MPMX19_04429: MPMX19_04429 - N-acetylmuramoyl-L-alanine amidase AmiA, at 793,276 to 794,118 _04429 MPMX19_04430: MPMX19_04430 - hypothetical protein, at 794,341 to 794,946 _04430 MPMX19_04431: MPMX19_04431 - hypothetical protein, at 794,959 to 796,437 _04431 Position (kb) 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 794.778 kb on + strand, within MPMX19_04430at 794.779 kb on - strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.818 kb on + strand, within MPMX19_04430at 794.818 kb on + strand, within MPMX19_04430at 794.819 kb on - strand, within MPMX19_04430at 794.908 kb on + strandat 794.908 kb on + strandat 794.908 kb on + strandat 794.908 kb on + strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 795.090 kb on + strandat 795.090 kb on + strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.105 kb on + strandat 795.105 kb on + strandat 795.105 kb on + strandat 795.105 kb on + strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.253 kb on + strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.254 kb on - strand, within MPMX19_04431at 795.322 kb on + strand, within MPMX19_04431at 795.323 kb on - strand, within MPMX19_04431at 795.385 kb on + strand, within MPMX19_04431at 795.386 kb on - strand, within MPMX19_04431at 795.386 kb on - strand, within MPMX19_04431at 795.532 kb on + strand, within MPMX19_04431at 795.532 kb on + strand, within MPMX19_04431at 795.533 kb on - strand, within MPMX19_04431at 795.533 kb on - strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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793,714 + MPMX19_04429 0.52 +0.5
793,714 + MPMX19_04429 0.52 +1.0
793,714 + MPMX19_04429 0.52 +0.2
793,714 + MPMX19_04429 0.52 +0.5
793,714 + MPMX19_04429 0.52 -1.7
793,714 + MPMX19_04429 0.52 +0.1
793,714 + MPMX19_04429 0.52 -1.0
793,714 + MPMX19_04429 0.52 +1.1
793,714 + MPMX19_04429 0.52 -0.4
793,714 + MPMX19_04429 0.52 +0.0
793,715 - MPMX19_04429 0.52 -0.6
793,715 - MPMX19_04429 0.52 +0.8
793,715 - MPMX19_04429 0.52 -0.3
793,715 - MPMX19_04429 0.52 -0.4
793,715 - MPMX19_04429 0.52 +0.0
793,715 - MPMX19_04429 0.52 -0.6
793,715 - MPMX19_04429 0.52 -2.0
793,715 - MPMX19_04429 0.52 -0.6
793,715 - MPMX19_04429 0.52 -0.4
794,778 + MPMX19_04430 0.72 -1.2
794,779 - MPMX19_04430 0.72 +0.0
794,788 + MPMX19_04430 0.74 -0.4
794,788 + MPMX19_04430 0.74 +0.8
794,788 + MPMX19_04430 0.74 -0.5
794,788 + MPMX19_04430 0.74 -2.2
794,789 - MPMX19_04430 0.74 -0.2
794,789 - MPMX19_04430 0.74 -0.4
794,789 - MPMX19_04430 0.74 -1.0
794,789 - MPMX19_04430 0.74 -0.1
794,789 - MPMX19_04430 0.74 +0.6
794,789 - MPMX19_04430 0.74 -0.8
794,789 - MPMX19_04430 0.74 -0.1
794,789 - MPMX19_04430 0.74 -1.4
794,818 + MPMX19_04430 0.79 -1.2
794,818 + MPMX19_04430 0.79 -2.6
794,819 - MPMX19_04430 0.79 -0.5
794,908 + -0.6
794,908 + -1.0
794,908 + -3.1
794,908 + +0.4
794,909 - +1.0
794,909 - +0.9
794,909 - -0.3
794,909 - +0.0
794,909 - +0.6
794,909 - +0.4
794,909 - -0.6
794,909 - +0.2
794,909 - -0.4
795,090 + -1.7
795,090 + -0.8
795,091 - -1.0
795,091 - -0.1
795,091 - -0.7
795,091 - +1.2
795,091 - +0.3
795,105 + -0.4
795,105 + +1.4
795,105 + -0.8
795,105 + -1.4
795,106 - +0.3
795,106 - -0.1
795,106 - -1.9
795,106 - -0.4
795,106 - -1.4
795,106 - +0.2
795,106 - -1.0
795,107 + MPMX19_04431 0.10 -1.2
795,107 + MPMX19_04431 0.10 +0.2
795,107 + MPMX19_04431 0.10 +0.8
795,107 + MPMX19_04431 0.10 +0.2
795,107 + MPMX19_04431 0.10 -2.0
795,107 + MPMX19_04431 0.10 +0.6
795,107 + MPMX19_04431 0.10 +0.4
795,107 + MPMX19_04431 0.10 +0.0
795,107 + MPMX19_04431 0.10 -0.1
795,107 + MPMX19_04431 0.10 +0.8
795,107 + MPMX19_04431 0.10 +1.1
795,107 + MPMX19_04431 0.10 +1.9
795,107 + MPMX19_04431 0.10 +0.1
795,107 + MPMX19_04431 0.10 -0.6
795,107 + MPMX19_04431 0.10 -0.3
795,107 + MPMX19_04431 0.10 -0.7
795,107 + MPMX19_04431 0.10 -1.8
795,107 + MPMX19_04431 0.10 -0.1
795,107 + MPMX19_04431 0.10 -2.4
795,107 + MPMX19_04431 0.10 -1.1
795,107 + MPMX19_04431 0.10 -0.4
795,107 + MPMX19_04431 0.10 -0.4
795,108 - MPMX19_04431 0.10 +0.3
795,108 - MPMX19_04431 0.10 +0.6
795,108 - MPMX19_04431 0.10 -0.1
795,108 - MPMX19_04431 0.10 -3.0
795,108 - MPMX19_04431 0.10 +0.0
795,108 - MPMX19_04431 0.10 -0.7
795,108 - MPMX19_04431 0.10 -1.4
795,108 - MPMX19_04431 0.10 -1.0
795,108 - MPMX19_04431 0.10 -0.2
795,108 - MPMX19_04431 0.10 +0.6
795,108 - MPMX19_04431 0.10 +1.8
795,108 - MPMX19_04431 0.10 +0.6
795,108 - MPMX19_04431 0.10 -0.6
795,108 - MPMX19_04431 0.10 -1.6
795,108 - MPMX19_04431 0.10 +0.4
795,108 - MPMX19_04431 0.10 -0.6
795,108 - MPMX19_04431 0.10 -0.1
795,108 - MPMX19_04431 0.10 +0.2
795,108 - MPMX19_04431 0.10 +0.1
795,108 - MPMX19_04431 0.10 +0.4
795,108 - MPMX19_04431 0.10 +0.3
795,108 - MPMX19_04431 0.10 -0.2
795,108 - MPMX19_04431 0.10 +0.9
795,108 - MPMX19_04431 0.10 -2.0
795,108 - MPMX19_04431 0.10 -1.4
795,108 - MPMX19_04431 0.10 +0.6
795,253 + MPMX19_04431 0.20 -0.2
795,253 + MPMX19_04431 0.20 -0.2
795,253 + MPMX19_04431 0.20 +0.2
795,253 + MPMX19_04431 0.20 +0.1
795,253 + MPMX19_04431 0.20 -0.6
795,253 + MPMX19_04431 0.20 -0.1
795,253 + MPMX19_04431 0.20 +0.6
795,253 + MPMX19_04431 0.20 +0.3
795,253 + MPMX19_04431 0.20 +0.0
795,253 + MPMX19_04431 0.20 +0.6
795,253 + MPMX19_04431 0.20 -0.1
795,253 + MPMX19_04431 0.20 -2.4
795,253 + MPMX19_04431 0.20 -0.9
795,253 + MPMX19_04431 0.20 -0.1
795,253 + MPMX19_04431 0.20 +0.1
795,254 - MPMX19_04431 0.20 +1.0
795,254 - MPMX19_04431 0.20 +0.3
795,254 - MPMX19_04431 0.20 -0.8
795,254 - MPMX19_04431 0.20 +0.2
795,254 - MPMX19_04431 0.20 +0.3
795,254 - MPMX19_04431 0.20 -0.1
795,254 - MPMX19_04431 0.20 -0.1
795,254 - MPMX19_04431 0.20 +0.0
795,254 - MPMX19_04431 0.20 -0.2
795,254 - MPMX19_04431 0.20 -1.7
795,254 - MPMX19_04431 0.20 -0.8
795,254 - MPMX19_04431 0.20 -0.9
795,254 - MPMX19_04431 0.20 -0.8
795,254 - MPMX19_04431 0.20 -0.2
795,254 - MPMX19_04431 0.20 -0.1
795,254 - MPMX19_04431 0.20 +0.9
795,254 - MPMX19_04431 0.20 +0.2
795,254 - MPMX19_04431 0.20 -0.7
795,254 - MPMX19_04431 0.20 +0.3
795,322 + MPMX19_04431 0.25 -0.5
795,323 - MPMX19_04431 0.25 +1.4
795,385 + MPMX19_04431 0.29 -0.6
795,386 - MPMX19_04431 0.29 -1.0
795,386 - MPMX19_04431 0.29 +0.1
795,532 + MPMX19_04431 0.39 -2.0
795,532 + MPMX19_04431 0.39 +0.0
795,533 - MPMX19_04431 0.39 -0.2
795,533 - MPMX19_04431 0.39 -0.2
795,721 + MPMX19_04431 0.52 +1.0
795,721 + MPMX19_04431 0.52 +0.8
795,721 + MPMX19_04431 0.52 +0.3
795,721 + MPMX19_04431 0.52 -0.5
795,721 + MPMX19_04431 0.52 -2.6
795,721 + MPMX19_04431 0.52 -1.4
795,721 + MPMX19_04431 0.52 -0.4
795,721 + MPMX19_04431 0.52 -0.2
795,721 + MPMX19_04431 0.52 -0.7
795,721 + MPMX19_04431 0.52 +0.3
795,721 + MPMX19_04431 0.52 -1.1
795,721 + MPMX19_04431 0.52 -0.4
795,721 + MPMX19_04431 0.52 -1.4
795,722 - MPMX19_04431 0.52 -0.7
795,722 - MPMX19_04431 0.52 -0.8
795,722 - MPMX19_04431 0.52 +0.0
795,722 - MPMX19_04431 0.52 -1.5
795,722 - MPMX19_04431 0.52 +0.1
795,722 - MPMX19_04431 0.52 -0.6
795,722 - MPMX19_04431 0.52 +0.0
795,722 - MPMX19_04431 0.52 -0.3
795,722 - MPMX19_04431 0.52 -0.3
795,805 + MPMX19_04431 0.57 -0.2
795,805 + MPMX19_04431 0.57 +0.0
795,805 + MPMX19_04431 0.57 -0.6
795,805 + MPMX19_04431 0.57 -1.7
795,805 + MPMX19_04431 0.57 -1.0
795,805 + MPMX19_04431 0.57 -0.9
795,805 + MPMX19_04431 0.57 -0.1
795,805 + MPMX19_04431 0.57 +0.3
795,805 + MPMX19_04431 0.57 +0.2
795,805 + MPMX19_04431 0.57 +0.6
795,805 + MPMX19_04431 0.57 +1.6
795,805 + MPMX19_04431 0.57 +0.8
795,805 + MPMX19_04431 0.57 +0.3
795,805 + MPMX19_04431 0.57 -0.4
795,805 + MPMX19_04431 0.57 +0.3
795,805 + MPMX19_04431 0.57 -0.4
795,805 + MPMX19_04431 0.57 +1.0
795,805 + MPMX19_04431 0.57 -0.3
795,805 + MPMX19_04431 0.57 -2.4
795,805 + MPMX19_04431 0.57 -0.4
795,805 + MPMX19_04431 0.57 -0.2
795,806 - MPMX19_04431 0.57 -0.2
795,806 - MPMX19_04431 0.57 +0.3
795,806 - MPMX19_04431 0.57 +0.3
795,806 - MPMX19_04431 0.57 +0.1
795,806 - MPMX19_04431 0.57 -1.0
795,806 - MPMX19_04431 0.57 +1.3
795,806 - MPMX19_04431 0.57 +0.5
795,806 - MPMX19_04431 0.57 -2.0
795,806 - MPMX19_04431 0.57 -1.0
795,806 - MPMX19_04431 0.57 -0.7
795,806 - MPMX19_04431 0.57 +0.3
795,806 - MPMX19_04431 0.57 -0.1
795,806 - MPMX19_04431 0.57 -0.4
795,806 - MPMX19_04431 0.57 -1.1
795,806 - MPMX19_04431 0.57 +1.9
795,806 - MPMX19_04431 0.57 -1.0

Or see this region's nucleotide sequence