Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03973

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03972 and MPMX19_03973 are separated by 147 nucleotidesMPMX19_03973 and MPMX19_03974 are separated by 132 nucleotides MPMX19_03972: MPMX19_03972 - Enolase, at 261,863 to 263,140 _03972 MPMX19_03973: MPMX19_03973 - Esterase YbfF, at 263,288 to 264,070 _03973 MPMX19_03974: MPMX19_03974 - putative lipid II flippase MurJ, at 264,203 to 265,753 _03974 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 262.381 kb on - strand, within MPMX19_03972at 262.381 kb on - strand, within MPMX19_03972at 262.381 kb on - strand, within MPMX19_03972at 262.381 kb on - strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.914 kb on + strand, within MPMX19_03972at 262.915 kb on - strand, within MPMX19_03972at 262.915 kb on - strand, within MPMX19_03972at 262.915 kb on - strand, within MPMX19_03972at 262.915 kb on - strand, within MPMX19_03972at 262.915 kb on - strand, within MPMX19_03972at 262.915 kb on - strand, within MPMX19_03972at 263.194 kb on + strandat 263.194 kb on + strandat 263.195 kb on - strandat 263.195 kb on - strandat 263.212 kb on + strandat 263.213 kb on - strandat 263.224 kb on - strandat 263.224 kb on - strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.237 kb on + strandat 263.238 kb on - strandat 263.238 kb on - strandat 263.238 kb on - strandat 263.238 kb on - strandat 263.238 kb on - strandat 263.251 kb on + strandat 263.251 kb on + strandat 263.251 kb on + strandat 263.251 kb on + strandat 263.251 kb on + strandat 263.251 kb on + strandat 263.252 kb on - strandat 263.252 kb on - strandat 263.252 kb on - strandat 263.252 kb on - strandat 263.252 kb on - strandat 263.252 kb on - strandat 263.252 kb on - strandat 263.424 kb on + strand, within MPMX19_03973at 263.424 kb on + strand, within MPMX19_03973at 263.424 kb on + strand, within MPMX19_03973at 263.424 kb on + strand, within MPMX19_03973at 263.424 kb on + strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.425 kb on - strand, within MPMX19_03973at 263.466 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.706 kb on + strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.707 kb on - strand, within MPMX19_03973at 263.871 kb on + strand, within MPMX19_03973at 263.871 kb on + strand, within MPMX19_03973at 263.872 kb on - strand, within MPMX19_03973at 263.872 kb on - strand, within MPMX19_03973at 263.925 kb on + strand, within MPMX19_03973at 263.925 kb on + strand, within MPMX19_03973at 263.925 kb on + strand, within MPMX19_03973at 263.925 kb on + strand, within MPMX19_03973at 263.925 kb on + strand, within MPMX19_03973at 263.926 kb on - strand, within MPMX19_03973at 263.926 kb on - strand, within MPMX19_03973at 263.926 kb on - strand, within MPMX19_03973at 263.926 kb on - strand, within MPMX19_03973at 263.926 kb on - strand, within MPMX19_03973at 263.926 kb on - strand, within MPMX19_03973at 264.042 kb on + strandat 264.042 kb on + strandat 264.042 kb on + strandat 264.042 kb on + strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.043 kb on - strandat 264.132 kb on + strandat 264.132 kb on + strandat 264.132 kb on + strandat 264.132 kb on + strandat 264.132 kb on + strandat 264.133 kb on - strandat 264.133 kb on - strandat 264.133 kb on - strandat 264.133 kb on - strandat 264.133 kb on - strandat 264.155 kb on + strandat 264.155 kb on + strandat 264.155 kb on + strandat 264.155 kb on + strandat 264.155 kb on + strandat 264.156 kb on - strandat 264.156 kb on - strandat 264.156 kb on - strandat 264.156 kb on - strandat 264.214 kb on + strandat 264.214 kb on + strandat 264.214 kb on + strandat 264.215 kb on - strandat 264.215 kb on - strandat 264.215 kb on - strandat 264.215 kb on - strandat 264.215 kb on - strandat 264.215 kb on - strandat 264.215 kb on - strandat 264.426 kb on + strand, within MPMX19_03974at 264.426 kb on + strand, within MPMX19_03974at 264.426 kb on + strand, within MPMX19_03974at 264.426 kb on + strand, within MPMX19_03974at 264.427 kb on - strand, within MPMX19_03974at 264.427 kb on - strand, within MPMX19_03974at 264.605 kb on + strand, within MPMX19_03974at 264.605 kb on + strand, within MPMX19_03974at 264.605 kb on + strand, within MPMX19_03974at 264.606 kb on - strand, within MPMX19_03974at 264.606 kb on - strand, within MPMX19_03974at 264.635 kb on + strand, within MPMX19_03974at 264.636 kb on - strand, within MPMX19_03974at 264.636 kb on - strand, within MPMX19_03974at 264.636 kb on - strand, within MPMX19_03974at 264.636 kb on - strand, within MPMX19_03974at 264.636 kb on - strand, within MPMX19_03974at 264.803 kb on + strand, within MPMX19_03974at 264.803 kb on + strand, within MPMX19_03974at 264.803 kb on + strand, within MPMX19_03974at 264.804 kb on - strand, within MPMX19_03974at 264.804 kb on - strand, within MPMX19_03974at 264.804 kb on - strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.986 kb on + strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.987 kb on - strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.992 kb on + strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.993 kb on - strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.995 kb on + strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974at 264.996 kb on - strand, within MPMX19_03974

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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262,381 - MPMX19_03972 0.41 -0.3
262,381 - MPMX19_03972 0.41 -2.0
262,381 - MPMX19_03972 0.41 -1.4
262,381 - MPMX19_03972 0.41 -1.9
262,914 + MPMX19_03972 0.82 -0.7
262,914 + MPMX19_03972 0.82 -1.1
262,914 + MPMX19_03972 0.82 -0.1
262,914 + MPMX19_03972 0.82 -0.4
262,914 + MPMX19_03972 0.82 +0.6
262,914 + MPMX19_03972 0.82 -1.3
262,914 + MPMX19_03972 0.82 +1.2
262,914 + MPMX19_03972 0.82 +0.1
262,914 + MPMX19_03972 0.82 -0.1
262,915 - MPMX19_03972 0.82 +0.3
262,915 - MPMX19_03972 0.82 +0.6
262,915 - MPMX19_03972 0.82 +1.1
262,915 - MPMX19_03972 0.82 +0.8
262,915 - MPMX19_03972 0.82 +1.0
262,915 - MPMX19_03972 0.82 +0.6
263,194 + +3.2
263,194 + -0.4
263,195 - +0.5
263,195 - -0.5
263,212 + +0.8
263,213 - -1.7
263,224 - +0.8
263,224 - +0.6
263,237 + -0.1
263,237 + -0.4
263,237 + +0.3
263,237 + -0.4
263,237 + +0.6
263,237 + +0.6
263,237 + -0.4
263,237 + -0.7
263,238 - -2.2
263,238 - -0.5
263,238 - +0.6
263,238 - -1.3
263,238 - -0.0
263,251 + -1.4
263,251 + +0.6
263,251 + -1.0
263,251 + -2.0
263,251 + +0.6
263,251 + -1.5
263,252 - -1.0
263,252 - -0.1
263,252 - -0.2
263,252 - +1.2
263,252 - +2.0
263,252 - +0.3
263,252 - -1.0
263,424 + MPMX19_03973 0.17 +0.2
263,424 + MPMX19_03973 0.17 -0.7
263,424 + MPMX19_03973 0.17 -0.4
263,424 + MPMX19_03973 0.17 -0.7
263,424 + MPMX19_03973 0.17 -1.3
263,425 - MPMX19_03973 0.17 -0.7
263,425 - MPMX19_03973 0.17 +0.6
263,425 - MPMX19_03973 0.17 -0.6
263,425 - MPMX19_03973 0.17 -1.4
263,425 - MPMX19_03973 0.17 -0.4
263,425 - MPMX19_03973 0.17 -0.1
263,425 - MPMX19_03973 0.17 -0.9
263,466 + MPMX19_03973 0.23 -1.7
263,706 + MPMX19_03973 0.53 -0.7
263,706 + MPMX19_03973 0.53 +0.0
263,706 + MPMX19_03973 0.53 -2.1
263,706 + MPMX19_03973 0.53 -0.7
263,706 + MPMX19_03973 0.53 -2.6
263,706 + MPMX19_03973 0.53 -0.4
263,706 + MPMX19_03973 0.53 -1.7
263,706 + MPMX19_03973 0.53 -0.4
263,706 + MPMX19_03973 0.53 -1.1
263,706 + MPMX19_03973 0.53 -0.1
263,706 + MPMX19_03973 0.53 -2.6
263,706 + MPMX19_03973 0.53 +0.2
263,707 - MPMX19_03973 0.54 -2.0
263,707 - MPMX19_03973 0.54 +0.9
263,707 - MPMX19_03973 0.54 -1.0
263,707 - MPMX19_03973 0.54 -1.0
263,707 - MPMX19_03973 0.54 -0.4
263,707 - MPMX19_03973 0.54 -0.4
263,707 - MPMX19_03973 0.54 -1.6
263,707 - MPMX19_03973 0.54 -0.3
263,707 - MPMX19_03973 0.54 -1.2
263,707 - MPMX19_03973 0.54 -0.3
263,707 - MPMX19_03973 0.54 -1.6
263,707 - MPMX19_03973 0.54 +0.9
263,707 - MPMX19_03973 0.54 -0.4
263,707 - MPMX19_03973 0.54 +0.6
263,707 - MPMX19_03973 0.54 -0.7
263,871 + MPMX19_03973 0.74 +0.6
263,871 + MPMX19_03973 0.74 -1.6
263,872 - MPMX19_03973 0.75 -0.1
263,872 - MPMX19_03973 0.75 +0.6
263,925 + MPMX19_03973 0.81 -1.0
263,925 + MPMX19_03973 0.81 -1.4
263,925 + MPMX19_03973 0.81 +0.3
263,925 + MPMX19_03973 0.81 -0.2
263,925 + MPMX19_03973 0.81 -1.0
263,926 - MPMX19_03973 0.81 -0.4
263,926 - MPMX19_03973 0.81 +0.1
263,926 - MPMX19_03973 0.81 -1.1
263,926 - MPMX19_03973 0.81 +0.6
263,926 - MPMX19_03973 0.81 -2.7
263,926 - MPMX19_03973 0.81 +0.3
264,042 + -0.9
264,042 + -2.0
264,042 + -0.2
264,042 + -0.1
264,043 - -1.0
264,043 - +0.6
264,043 - -0.1
264,043 - +0.6
264,043 - -2.7
264,043 - -0.7
264,043 - -2.2
264,043 - -0.7
264,132 + -1.0
264,132 + -0.4
264,132 + -0.4
264,132 + -1.0
264,132 + -0.1
264,133 - -0.6
264,133 - -0.4
264,133 - -1.7
264,133 - -0.4
264,133 - +0.0
264,155 + -0.6
264,155 + +0.3
264,155 + +0.0
264,155 + -0.9
264,155 + +1.2
264,156 - +0.1
264,156 - -0.0
264,156 - -0.3
264,156 - +0.9
264,214 + +0.6
264,214 + +0.8
264,214 + +1.0
264,215 - -0.4
264,215 - -1.4
264,215 - -1.2
264,215 - -0.1
264,215 - -1.2
264,215 - -0.6
264,215 - +1.5
264,426 + MPMX19_03974 0.14 -0.1
264,426 + MPMX19_03974 0.14 -0.9
264,426 + MPMX19_03974 0.14 -0.5
264,426 + MPMX19_03974 0.14 +1.8
264,427 - MPMX19_03974 0.14 -1.0
264,427 - MPMX19_03974 0.14 +0.6
264,605 + MPMX19_03974 0.26 +1.9
264,605 + MPMX19_03974 0.26 +0.3
264,605 + MPMX19_03974 0.26 -0.2
264,606 - MPMX19_03974 0.26 -2.9
264,606 - MPMX19_03974 0.26 +1.8
264,635 + MPMX19_03974 0.28 +1.2
264,636 - MPMX19_03974 0.28 +0.6
264,636 - MPMX19_03974 0.28 -0.8
264,636 - MPMX19_03974 0.28 -0.1
264,636 - MPMX19_03974 0.28 -1.4
264,636 - MPMX19_03974 0.28 -1.6
264,803 + MPMX19_03974 0.39 +1.3
264,803 + MPMX19_03974 0.39 -0.3
264,803 + MPMX19_03974 0.39 -0.4
264,804 - MPMX19_03974 0.39 +1.8
264,804 - MPMX19_03974 0.39 +0.9
264,804 - MPMX19_03974 0.39 +0.2
264,986 + MPMX19_03974 0.50 +0.6
264,986 + MPMX19_03974 0.50 -0.4
264,986 + MPMX19_03974 0.50 -0.7
264,986 + MPMX19_03974 0.50 -1.1
264,986 + MPMX19_03974 0.50 +0.9
264,986 + MPMX19_03974 0.50 -1.6
264,986 + MPMX19_03974 0.50 -0.4
264,986 + MPMX19_03974 0.50 -2.0
264,986 + MPMX19_03974 0.50 +0.3
264,986 + MPMX19_03974 0.50 +0.2
264,986 + MPMX19_03974 0.50 -0.2
264,986 + MPMX19_03974 0.50 +1.5
264,986 + MPMX19_03974 0.50 +1.3
264,986 + MPMX19_03974 0.50 +0.6
264,986 + MPMX19_03974 0.50 -1.0
264,987 - MPMX19_03974 0.51 +0.5
264,987 - MPMX19_03974 0.51 -0.7
264,987 - MPMX19_03974 0.51 -0.4
264,987 - MPMX19_03974 0.51 -1.4
264,987 - MPMX19_03974 0.51 -0.2
264,987 - MPMX19_03974 0.51 +0.3
264,987 - MPMX19_03974 0.51 +0.6
264,987 - MPMX19_03974 0.51 -1.7
264,987 - MPMX19_03974 0.51 -0.6
264,987 - MPMX19_03974 0.51 +0.4
264,987 - MPMX19_03974 0.51 -1.7
264,992 + MPMX19_03974 0.51 -0.6
264,992 + MPMX19_03974 0.51 +0.2
264,992 + MPMX19_03974 0.51 -0.6
264,992 + MPMX19_03974 0.51 +0.2
264,992 + MPMX19_03974 0.51 -0.2
264,992 + MPMX19_03974 0.51 +1.0
264,992 + MPMX19_03974 0.51 +0.1
264,993 - MPMX19_03974 0.51 -1.0
264,993 - MPMX19_03974 0.51 -0.1
264,993 - MPMX19_03974 0.51 -0.3
264,993 - MPMX19_03974 0.51 -0.6
264,993 - MPMX19_03974 0.51 +0.9
264,993 - MPMX19_03974 0.51 -0.3
264,993 - MPMX19_03974 0.51 +0.2
264,993 - MPMX19_03974 0.51 +1.2
264,993 - MPMX19_03974 0.51 +0.4
264,993 - MPMX19_03974 0.51 -1.9
264,993 - MPMX19_03974 0.51 -0.4
264,993 - MPMX19_03974 0.51 +1.1
264,995 + MPMX19_03974 0.51 +0.2
264,995 + MPMX19_03974 0.51 -0.3
264,995 + MPMX19_03974 0.51 +0.0
264,995 + MPMX19_03974 0.51 -1.2
264,995 + MPMX19_03974 0.51 +0.0
264,995 + MPMX19_03974 0.51 -0.8
264,995 + MPMX19_03974 0.51 -1.7
264,996 - MPMX19_03974 0.51 +0.6
264,996 - MPMX19_03974 0.51 +0.0
264,996 - MPMX19_03974 0.51 -0.4
264,996 - MPMX19_03974 0.51 -0.5
264,996 - MPMX19_03974 0.51 +0.1
264,996 - MPMX19_03974 0.51 +0.3
264,996 - MPMX19_03974 0.51 -0.8

Or see this region's nucleotide sequence