Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03714

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03713 and MPMX19_03714 are separated by 208 nucleotidesMPMX19_03714 and MPMX19_03715 overlap by 8 nucleotidesMPMX19_03715 and MPMX19_03716 are separated by 7 nucleotidesMPMX19_03716 and MPMX19_03717 are separated by 30 nucleotides MPMX19_03713: MPMX19_03713 - 3-succinoylsemialdehyde-pyridine dehydrogenase, at 1,153,673 to 1,155,124 _03713 MPMX19_03714: MPMX19_03714 - Sensor histidine kinase RcsC, at 1,155,333 to 1,159,106 _03714 MPMX19_03715: MPMX19_03715 - Response regulator ArlR, at 1,159,099 to 1,159,485 _03715 MPMX19_03716: MPMX19_03716 - hypothetical protein, at 1,159,493 to 1,160,065 _03716 MPMX19_03717: MPMX19_03717 - Hypoxic response protein 1, at 1,160,096 to 1,160,527 _03717 Position (kb) 1155 1156 1157 1158 1159 1160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1154.750 kb on + strand, within MPMX19_03713at 1154.750 kb on + strand, within MPMX19_03713at 1154.750 kb on + strand, within MPMX19_03713at 1154.751 kb on - strand, within MPMX19_03713at 1154.859 kb on + strand, within MPMX19_03713at 1154.859 kb on + strand, within MPMX19_03713at 1154.860 kb on - strand, within MPMX19_03713at 1154.860 kb on - strand, within MPMX19_03713at 1154.860 kb on - strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.871 kb on + strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1154.872 kb on - strand, within MPMX19_03713at 1155.102 kb on + strandat 1155.102 kb on + strandat 1155.103 kb on - strandat 1155.103 kb on - strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.141 kb on + strandat 1155.142 kb on - strandat 1155.142 kb on - strandat 1155.142 kb on - strandat 1155.142 kb on - strandat 1155.205 kb on + strandat 1155.205 kb on + strandat 1155.205 kb on + strandat 1155.257 kb on + strandat 1155.257 kb on + strandat 1155.258 kb on - strandat 1155.258 kb on - strandat 1155.651 kb on + strandat 1155.651 kb on + strandat 1155.764 kb on + strand, within MPMX19_03714at 1156.014 kb on + strand, within MPMX19_03714at 1156.014 kb on + strand, within MPMX19_03714at 1156.015 kb on - strand, within MPMX19_03714at 1156.020 kb on + strand, within MPMX19_03714at 1156.020 kb on + strand, within MPMX19_03714at 1156.020 kb on + strand, within MPMX19_03714at 1156.020 kb on + strand, within MPMX19_03714at 1156.021 kb on - strand, within MPMX19_03714at 1156.021 kb on - strand, within MPMX19_03714at 1156.021 kb on - strand, within MPMX19_03714at 1156.036 kb on - strand, within MPMX19_03714at 1156.041 kb on + strand, within MPMX19_03714at 1156.041 kb on + strand, within MPMX19_03714at 1156.042 kb on - strand, within MPMX19_03714at 1156.042 kb on - strand, within MPMX19_03714at 1156.043 kb on + strand, within MPMX19_03714at 1156.044 kb on - strand, within MPMX19_03714at 1156.539 kb on + strand, within MPMX19_03714at 1156.539 kb on + strand, within MPMX19_03714at 1156.540 kb on - strand, within MPMX19_03714at 1156.540 kb on - strand, within MPMX19_03714at 1156.540 kb on - strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.749 kb on + strand, within MPMX19_03714at 1156.750 kb on - strand, within MPMX19_03714at 1156.750 kb on - strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.917 kb on + strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.918 kb on - strand, within MPMX19_03714at 1156.956 kb on + strand, within MPMX19_03714at 1157.316 kb on + strand, within MPMX19_03714at 1157.343 kb on + strand, within MPMX19_03714at 1157.343 kb on + strand, within MPMX19_03714at 1157.343 kb on + strand, within MPMX19_03714at 1157.343 kb on + strand, within MPMX19_03714at 1157.343 kb on + strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.344 kb on - strand, within MPMX19_03714at 1157.560 kb on - strand, within MPMX19_03714at 1158.573 kb on + strand, within MPMX19_03714at 1158.573 kb on + strand, within MPMX19_03714at 1158.573 kb on + strand, within MPMX19_03714at 1158.573 kb on + strand, within MPMX19_03714at 1158.573 kb on - strand, within MPMX19_03714at 1158.574 kb on - strand, within MPMX19_03714at 1158.574 kb on - strand, within MPMX19_03714at 1158.574 kb on - strand, within MPMX19_03714at 1158.574 kb on - strand, within MPMX19_03714at 1158.574 kb on - strand, within MPMX19_03714at 1158.657 kb on - strand, within MPMX19_03714at 1159.061 kb on + strandat 1159.061 kb on + strandat 1159.061 kb on + strandat 1159.062 kb on - strandat 1159.062 kb on - strandat 1159.094 kb on + strandat 1159.094 kb on + strandat 1159.094 kb on + strandat 1159.095 kb on - strandat 1159.095 kb on - strandat 1159.095 kb on - strandat 1159.095 kb on - strandat 1159.104 kb on + strandat 1159.104 kb on + strandat 1159.104 kb on + strandat 1159.104 kb on + strandat 1159.104 kb on + strandat 1159.105 kb on - strandat 1159.105 kb on - strandat 1159.105 kb on - strandat 1159.105 kb on - strandat 1159.105 kb on - strandat 1159.105 kb on - strandat 1159.399 kb on + strand, within MPMX19_03715at 1159.399 kb on + strand, within MPMX19_03715at 1159.399 kb on + strand, within MPMX19_03715at 1159.399 kb on + strand, within MPMX19_03715at 1159.399 kb on + strand, within MPMX19_03715at 1159.399 kb on + strand, within MPMX19_03715at 1159.399 kb on + strand, within MPMX19_03715at 1159.400 kb on - strand, within MPMX19_03715at 1159.400 kb on - strand, within MPMX19_03715at 1159.400 kb on - strand, within MPMX19_03715at 1159.400 kb on - strand, within MPMX19_03715at 1159.400 kb on - strand, within MPMX19_03715at 1159.400 kb on - strand, within MPMX19_03715at 1159.483 kb on + strandat 1159.931 kb on + strand, within MPMX19_03716at 1159.931 kb on + strand, within MPMX19_03716at 1159.982 kb on + strand, within MPMX19_03716at 1159.982 kb on + strand, within MPMX19_03716at 1159.982 kb on + strand, within MPMX19_03716at 1159.982 kb on + strand, within MPMX19_03716at 1159.982 kb on + strand, within MPMX19_03716at 1159.983 kb on - strand, within MPMX19_03716at 1159.983 kb on - strand, within MPMX19_03716at 1159.983 kb on - strand, within MPMX19_03716at 1159.983 kb on - strand, within MPMX19_03716at 1159.991 kb on + strand, within MPMX19_03716at 1159.991 kb on + strand, within MPMX19_03716at 1159.991 kb on + strand, within MPMX19_03716at 1159.992 kb on - strand, within MPMX19_03716at 1159.992 kb on - strand, within MPMX19_03716at 1159.992 kb on - strand, within MPMX19_03716at 1160.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,154,750 + MPMX19_03713 0.74 -0.9
1,154,750 + MPMX19_03713 0.74 -0.1
1,154,750 + MPMX19_03713 0.74 +0.1
1,154,751 - MPMX19_03713 0.74 -0.4
1,154,859 + MPMX19_03713 0.82 +0.7
1,154,859 + MPMX19_03713 0.82 +0.1
1,154,860 - MPMX19_03713 0.82 +0.6
1,154,860 - MPMX19_03713 0.82 +0.2
1,154,860 - MPMX19_03713 0.82 +0.6
1,154,871 + MPMX19_03713 0.83 +0.2
1,154,871 + MPMX19_03713 0.83 +0.6
1,154,871 + MPMX19_03713 0.83 -0.0
1,154,871 + MPMX19_03713 0.83 -0.6
1,154,871 + MPMX19_03713 0.83 -0.3
1,154,871 + MPMX19_03713 0.83 -0.8
1,154,871 + MPMX19_03713 0.83 -1.4
1,154,871 + MPMX19_03713 0.83 +1.0
1,154,871 + MPMX19_03713 0.83 -0.1
1,154,871 + MPMX19_03713 0.83 -1.2
1,154,871 + MPMX19_03713 0.83 -2.2
1,154,872 - MPMX19_03713 0.83 -0.8
1,154,872 - MPMX19_03713 0.83 -0.2
1,154,872 - MPMX19_03713 0.83 -1.0
1,154,872 - MPMX19_03713 0.83 -0.4
1,154,872 - MPMX19_03713 0.83 -1.4
1,154,872 - MPMX19_03713 0.83 -0.1
1,154,872 - MPMX19_03713 0.83 +0.3
1,155,102 + -0.3
1,155,102 + +1.3
1,155,103 - -0.7
1,155,103 - +0.0
1,155,141 + +0.3
1,155,141 + +0.6
1,155,141 + +0.0
1,155,141 + -0.7
1,155,141 + -0.4
1,155,141 + -0.6
1,155,141 + +0.2
1,155,141 + -1.6
1,155,142 - -1.4
1,155,142 - -0.8
1,155,142 - +0.3
1,155,142 - -0.7
1,155,205 + +0.9
1,155,205 + -1.3
1,155,205 + -0.4
1,155,257 + +1.0
1,155,257 + +0.0
1,155,258 - -0.6
1,155,258 - -1.0
1,155,651 + -0.1
1,155,651 + +0.4
1,155,764 + MPMX19_03714 0.11 +1.6
1,156,014 + MPMX19_03714 0.18 -1.7
1,156,014 + MPMX19_03714 0.18 -2.8
1,156,015 - MPMX19_03714 0.18 -0.1
1,156,020 + MPMX19_03714 0.18 +1.5
1,156,020 + MPMX19_03714 0.18 -0.4
1,156,020 + MPMX19_03714 0.18 +0.3
1,156,020 + MPMX19_03714 0.18 -1.0
1,156,021 - MPMX19_03714 0.18 +1.3
1,156,021 - MPMX19_03714 0.18 -0.2
1,156,021 - MPMX19_03714 0.18 -0.8
1,156,036 - MPMX19_03714 0.19 -0.2
1,156,041 + MPMX19_03714 0.19 -0.8
1,156,041 + MPMX19_03714 0.19 +0.1
1,156,042 - MPMX19_03714 0.19 +0.0
1,156,042 - MPMX19_03714 0.19 +0.6
1,156,043 + MPMX19_03714 0.19 +0.3
1,156,044 - MPMX19_03714 0.19 +1.3
1,156,539 + MPMX19_03714 0.32 -0.6
1,156,539 + MPMX19_03714 0.32 -0.4
1,156,540 - MPMX19_03714 0.32 +0.0
1,156,540 - MPMX19_03714 0.32 +0.2
1,156,540 - MPMX19_03714 0.32 +0.8
1,156,749 + MPMX19_03714 0.38 -0.4
1,156,749 + MPMX19_03714 0.38 +0.3
1,156,749 + MPMX19_03714 0.38 -1.7
1,156,749 + MPMX19_03714 0.38 -1.2
1,156,749 + MPMX19_03714 0.38 +0.2
1,156,749 + MPMX19_03714 0.38 -0.6
1,156,749 + MPMX19_03714 0.38 -0.6
1,156,750 - MPMX19_03714 0.38 +0.0
1,156,750 - MPMX19_03714 0.38 +0.6
1,156,917 + MPMX19_03714 0.42 -0.4
1,156,917 + MPMX19_03714 0.42 -0.5
1,156,917 + MPMX19_03714 0.42 -2.4
1,156,917 + MPMX19_03714 0.42 +1.2
1,156,917 + MPMX19_03714 0.42 +0.6
1,156,917 + MPMX19_03714 0.42 -1.2
1,156,917 + MPMX19_03714 0.42 +1.1
1,156,917 + MPMX19_03714 0.42 -1.4
1,156,917 + MPMX19_03714 0.42 +0.6
1,156,917 + MPMX19_03714 0.42 +0.6
1,156,917 + MPMX19_03714 0.42 -1.0
1,156,917 + MPMX19_03714 0.42 -0.5
1,156,918 - MPMX19_03714 0.42 +1.2
1,156,918 - MPMX19_03714 0.42 -1.0
1,156,918 - MPMX19_03714 0.42 -0.7
1,156,918 - MPMX19_03714 0.42 +0.2
1,156,918 - MPMX19_03714 0.42 +0.8
1,156,918 - MPMX19_03714 0.42 -0.7
1,156,918 - MPMX19_03714 0.42 +0.8
1,156,918 - MPMX19_03714 0.42 -0.7
1,156,918 - MPMX19_03714 0.42 -0.4
1,156,918 - MPMX19_03714 0.42 +0.2
1,156,918 - MPMX19_03714 0.42 -1.4
1,156,956 + MPMX19_03714 0.43 -1.4
1,157,316 + MPMX19_03714 0.53 -0.6
1,157,343 + MPMX19_03714 0.53 -2.4
1,157,343 + MPMX19_03714 0.53 -0.7
1,157,343 + MPMX19_03714 0.53 -0.3
1,157,343 + MPMX19_03714 0.53 +0.3
1,157,343 + MPMX19_03714 0.53 -0.3
1,157,344 - MPMX19_03714 0.53 -1.0
1,157,344 - MPMX19_03714 0.53 -1.2
1,157,344 - MPMX19_03714 0.53 +0.8
1,157,344 - MPMX19_03714 0.53 -1.2
1,157,344 - MPMX19_03714 0.53 -0.8
1,157,344 - MPMX19_03714 0.53 -2.2
1,157,344 - MPMX19_03714 0.53 +0.4
1,157,560 - MPMX19_03714 0.59 -0.1
1,158,573 + MPMX19_03714 0.86 +0.6
1,158,573 + MPMX19_03714 0.86 -0.7
1,158,573 + MPMX19_03714 0.86 -1.4
1,158,573 + MPMX19_03714 0.86 -1.6
1,158,573 - MPMX19_03714 0.86 +1.2
1,158,574 - MPMX19_03714 0.86 +0.0
1,158,574 - MPMX19_03714 0.86 -1.4
1,158,574 - MPMX19_03714 0.86 +0.4
1,158,574 - MPMX19_03714 0.86 -0.4
1,158,574 - MPMX19_03714 0.86 -0.7
1,158,657 - MPMX19_03714 0.88 +0.6
1,159,061 + -0.1
1,159,061 + +0.8
1,159,061 + +0.8
1,159,062 - +0.4
1,159,062 - -0.2
1,159,094 + +0.0
1,159,094 + +0.3
1,159,094 + +0.4
1,159,095 - -1.4
1,159,095 - -0.3
1,159,095 - -1.1
1,159,095 - +0.7
1,159,104 + +0.4
1,159,104 + -1.4
1,159,104 + -0.4
1,159,104 + +0.5
1,159,104 + -1.4
1,159,105 - +0.6
1,159,105 - +1.4
1,159,105 - +1.6
1,159,105 - -0.5
1,159,105 - -0.2
1,159,105 - +0.4
1,159,399 + MPMX19_03715 0.78 -0.1
1,159,399 + MPMX19_03715 0.78 -1.0
1,159,399 + MPMX19_03715 0.78 -2.4
1,159,399 + MPMX19_03715 0.78 -2.0
1,159,399 + MPMX19_03715 0.78 +0.7
1,159,399 + MPMX19_03715 0.78 +0.6
1,159,399 + MPMX19_03715 0.78 +0.0
1,159,400 - MPMX19_03715 0.78 -0.9
1,159,400 - MPMX19_03715 0.78 -0.8
1,159,400 - MPMX19_03715 0.78 -0.5
1,159,400 - MPMX19_03715 0.78 -0.0
1,159,400 - MPMX19_03715 0.78 +1.9
1,159,400 - MPMX19_03715 0.78 -0.2
1,159,483 + -1.0
1,159,931 + MPMX19_03716 0.76 +0.4
1,159,931 + MPMX19_03716 0.76 -0.6
1,159,982 + MPMX19_03716 0.85 -1.4
1,159,982 + MPMX19_03716 0.85 +0.8
1,159,982 + MPMX19_03716 0.85 +0.9
1,159,982 + MPMX19_03716 0.85 -0.4
1,159,982 + MPMX19_03716 0.85 -2.1
1,159,983 - MPMX19_03716 0.86 -0.2
1,159,983 - MPMX19_03716 0.86 -0.1
1,159,983 - MPMX19_03716 0.86 +0.6
1,159,983 - MPMX19_03716 0.86 +0.2
1,159,991 + MPMX19_03716 0.87 -0.4
1,159,991 + MPMX19_03716 0.87 -1.7
1,159,991 + MPMX19_03716 0.87 -1.0
1,159,992 - MPMX19_03716 0.87 -0.4
1,159,992 - MPMX19_03716 0.87 -0.4
1,159,992 - MPMX19_03716 0.87 +1.2
1,160,064 - +0.2

Or see this region's nucleotide sequence