Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03543

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03541 and MPMX19_03542 overlap by 8 nucleotidesMPMX19_03542 and MPMX19_03543 overlap by 4 nucleotidesMPMX19_03543 and MPMX19_03544 are separated by 19 nucleotides MPMX19_03541: MPMX19_03541 - Glutathione transport system permease protein GsiC, at 960,832 to 961,779 _03541 MPMX19_03542: MPMX19_03542 - Glutathione transport system permease protein GsiD, at 961,772 to 962,602 _03542 MPMX19_03543: MPMX19_03543 - putative ABC transporter ATP-binding protein YejF, at 962,599 to 964,200 _03543 MPMX19_03544: MPMX19_03544 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 964,220 to 965,431 _03544 Position (kb) 962 963 964 965Strain fitness (log2 ratio) -2 -1 0 1 2at 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.712 kb on - strandat 961.744 kb on + strandat 961.744 kb on + strandat 961.745 kb on - strandat 961.745 kb on - strandat 962.072 kb on + strand, within MPMX19_03542at 962.260 kb on - strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.578 kb on + strandat 962.578 kb on + strandat 962.578 kb on + strandat 962.579 kb on - strandat 962.579 kb on - strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.638 kb on + strandat 962.638 kb on + strandat 962.639 kb on - strandat 962.639 kb on - strandat 962.639 kb on - strandat 962.639 kb on - strandat 963.226 kb on + strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.451 kb on + strand, within MPMX19_03543at 963.452 kb on - strand, within MPMX19_03543at 963.847 kb on + strand, within MPMX19_03543at 963.848 kb on - strand, within MPMX19_03543at 964.030 kb on + strand, within MPMX19_03543at 964.030 kb on + strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.156 kb on + strandat 964.157 kb on - strandat 964.301 kb on + strandat 964.301 kb on + strandat 964.301 kb on + strandat 964.301 kb on + strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.580 kb on + strand, within MPMX19_03544at 964.580 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 965.027 kb on + strand, within MPMX19_03544

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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961,711 + +0.6
961,711 + +0.1
961,711 + -0.1
961,711 + +0.2
961,712 - -0.7
961,744 + -0.6
961,744 + -0.5
961,745 - -1.0
961,745 - +0.8
962,072 + MPMX19_03542 0.36 -0.0
962,260 - MPMX19_03542 0.59 -0.4
962,273 + MPMX19_03542 0.60 +1.0
962,273 + MPMX19_03542 0.60 -1.0
962,273 + MPMX19_03542 0.60 +0.5
962,273 + MPMX19_03542 0.60 +1.0
962,273 + MPMX19_03542 0.60 +0.2
962,273 + MPMX19_03542 0.60 -1.5
962,273 + MPMX19_03542 0.60 -0.7
962,273 + MPMX19_03542 0.60 +0.8
962,274 - MPMX19_03542 0.60 -0.5
962,274 - MPMX19_03542 0.60 -0.1
962,274 - MPMX19_03542 0.60 +0.2
962,274 - MPMX19_03542 0.60 -0.2
962,274 - MPMX19_03542 0.60 +1.8
962,274 - MPMX19_03542 0.60 -1.6
962,274 - MPMX19_03542 0.60 -0.2
962,274 - MPMX19_03542 0.60 -0.7
962,480 + MPMX19_03542 0.85 -0.2
962,480 + MPMX19_03542 0.85 -0.4
962,480 + MPMX19_03542 0.85 +1.4
962,480 + MPMX19_03542 0.85 +0.6
962,480 + MPMX19_03542 0.85 +0.2
962,480 + MPMX19_03542 0.85 -0.3
962,480 + MPMX19_03542 0.85 +0.6
962,481 - MPMX19_03542 0.85 +0.6
962,481 - MPMX19_03542 0.85 -0.1
962,481 - MPMX19_03542 0.85 -1.3
962,481 - MPMX19_03542 0.85 +0.5
962,481 - MPMX19_03542 0.85 -0.8
962,481 - MPMX19_03542 0.85 +0.5
962,481 - MPMX19_03542 0.85 +0.1
962,481 - MPMX19_03542 0.85 -1.2
962,578 + +0.0
962,578 + +0.4
962,578 + -0.4
962,579 - -1.7
962,579 - -0.8
962,626 + -0.7
962,626 + +0.6
962,626 + +0.8
962,626 + -0.8
962,627 - +0.2
962,627 - +0.3
962,627 - +0.0
962,627 - -1.0
962,638 + -1.3
962,638 + -1.0
962,639 - +0.1
962,639 - +0.0
962,639 - +0.1
962,639 - -0.9
963,226 + MPMX19_03543 0.39 -0.2
963,227 - MPMX19_03543 0.39 +1.6
963,227 - MPMX19_03543 0.39 +0.9
963,227 - MPMX19_03543 0.39 -0.4
963,227 - MPMX19_03543 0.39 +1.0
963,227 - MPMX19_03543 0.39 -0.8
963,451 + MPMX19_03543 0.53 +1.3
963,452 - MPMX19_03543 0.53 +0.2
963,847 + MPMX19_03543 0.78 +0.6
963,848 - MPMX19_03543 0.78 -0.2
964,030 + MPMX19_03543 0.89 -0.4
964,030 + MPMX19_03543 0.89 -0.4
964,031 - MPMX19_03543 0.89 +0.1
964,031 - MPMX19_03543 0.89 +0.9
964,031 - MPMX19_03543 0.89 +0.6
964,031 - MPMX19_03543 0.89 +0.6
964,156 + -0.1
964,157 - +0.8
964,301 + -0.1
964,301 + +0.6
964,301 + +0.4
964,301 + -0.4
964,302 - +0.6
964,302 - -1.3
964,302 - -0.0
964,302 - +0.2
964,302 - +1.4
964,302 - -0.8
964,302 - -1.0
964,302 - -0.7
964,538 + MPMX19_03544 0.26 +0.0
964,538 + MPMX19_03544 0.26 +0.6
964,538 + MPMX19_03544 0.26 +1.4
964,538 + MPMX19_03544 0.26 -0.4
964,538 + MPMX19_03544 0.26 +0.3
964,539 - MPMX19_03544 0.26 +0.5
964,539 - MPMX19_03544 0.26 +1.6
964,539 - MPMX19_03544 0.26 -2.0
964,539 - MPMX19_03544 0.26 -1.5
964,539 - MPMX19_03544 0.26 -2.2
964,539 - MPMX19_03544 0.26 +0.8
964,539 - MPMX19_03544 0.26 +0.0
964,539 - MPMX19_03544 0.26 -0.1
964,580 + MPMX19_03544 0.30 +0.5
964,580 + MPMX19_03544 0.30 +0.0
964,646 + MPMX19_03544 0.35 -0.1
964,646 + MPMX19_03544 0.35 -1.2
964,646 + MPMX19_03544 0.35 -1.1
964,646 + MPMX19_03544 0.35 -1.4
964,646 + MPMX19_03544 0.35 -0.5
964,646 + MPMX19_03544 0.35 +1.0
964,646 + MPMX19_03544 0.35 +0.1
964,646 + MPMX19_03544 0.35 -1.2
964,646 + MPMX19_03544 0.35 +0.2
964,646 + MPMX19_03544 0.35 -1.4
964,647 - MPMX19_03544 0.35 +0.0
964,647 - MPMX19_03544 0.35 -0.2
964,647 - MPMX19_03544 0.35 -0.0
964,647 - MPMX19_03544 0.35 +0.5
964,647 - MPMX19_03544 0.35 -0.4
964,647 - MPMX19_03544 0.35 -0.8
964,647 - MPMX19_03544 0.35 +0.0
964,647 - MPMX19_03544 0.35 -0.1
964,647 - MPMX19_03544 0.35 -0.9
964,647 - MPMX19_03544 0.35 -1.0
964,647 - MPMX19_03544 0.35 +0.4
964,647 - MPMX19_03544 0.35 -2.2
965,027 + MPMX19_03544 0.67 +1.0

Or see this region's nucleotide sequence