Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03454 and MPMX19_03455 are separated by 205 nucleotides MPMX19_03455 and MPMX19_03456 are separated by 264 nucleotides MPMX19_03456 and MPMX19_03457 are separated by 11 nucleotides
MPMX19_03454: MPMX19_03454 - Nitrate import ATP-binding protein NrtC, at 851,116 to 851,949
_03454
MPMX19_03455: MPMX19_03455 - HTH-type transcriptional repressor NagR, at 852,155 to 852,874
_03455
MPMX19_03456: MPMX19_03456 - hypothetical protein, at 853,139 to 853,303
_03456
MPMX19_03457: MPMX19_03457 - hypothetical protein, at 853,315 to 855,117
_03457
Position (kb) 852
853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.844 kb on - strand, within MPMX19_03454 at 852.189 kb on - strand at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.872 kb on + strand at 852.872 kb on + strand at 852.872 kb on + strand at 853.301 kb on + strand at 853.302 kb on - strand at 853.302 kb on - strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.324 kb on - strand at 853.324 kb on - strand at 853.324 kb on - strand at 853.324 kb on - strand at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.728 kb on + strand, within MPMX19_03457 at 853.728 kb on + strand, within MPMX19_03457 at 853.859 kb on + strand, within MPMX19_03457 at 853.860 kb on - strand, within MPMX19_03457
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 851,651 + MPMX19_03454 0.64 -1.0 851,651 + MPMX19_03454 0.64 +1.1 851,651 + MPMX19_03454 0.64 +2.2 851,651 + MPMX19_03454 0.64 +0.5 851,651 + MPMX19_03454 0.64 -0.9 851,651 + MPMX19_03454 0.64 +0.4 851,652 - MPMX19_03454 0.64 -0.2 851,652 - MPMX19_03454 0.64 +0.2 851,652 - MPMX19_03454 0.64 -0.1 851,843 + MPMX19_03454 0.87 -0.2 851,843 + MPMX19_03454 0.87 -0.8 851,843 + MPMX19_03454 0.87 -0.1 851,844 - MPMX19_03454 0.87 -1.4 852,189 - -0.3 852,642 - MPMX19_03455 0.68 -0.4 852,642 - MPMX19_03455 0.68 +0.3 852,642 - MPMX19_03455 0.68 -0.2 852,642 - MPMX19_03455 0.68 +1.2 852,872 + +0.6 852,872 + +1.9 852,872 + +0.0 853,301 + -0.9 853,302 - +0.6 853,302 - +0.9 853,323 + +0.6 853,323 + -0.1 853,323 + +1.2 853,323 + -0.3 853,323 + +0.1 853,323 + +0.4 853,323 + +1.0 853,324 - -0.7 853,324 - -0.8 853,324 - -0.1 853,324 - -0.7 853,655 + MPMX19_03457 0.19 +0.2 853,655 + MPMX19_03457 0.19 -0.5 853,655 + MPMX19_03457 0.19 +0.3 853,655 + MPMX19_03457 0.19 -0.7 853,655 + MPMX19_03457 0.19 -0.2 853,655 + MPMX19_03457 0.19 -1.7 853,655 + MPMX19_03457 0.19 +0.2 853,655 + MPMX19_03457 0.19 +0.0 853,655 + MPMX19_03457 0.19 -2.7 853,655 + MPMX19_03457 0.19 -0.2 853,655 + MPMX19_03457 0.19 -3.0 853,656 - MPMX19_03457 0.19 -1.2 853,656 - MPMX19_03457 0.19 +1.8 853,656 - MPMX19_03457 0.19 +0.3 853,656 - MPMX19_03457 0.19 +0.0 853,728 + MPMX19_03457 0.23 -0.4 853,728 + MPMX19_03457 0.23 -0.6 853,859 + MPMX19_03457 0.30 +0.8 853,860 - MPMX19_03457 0.30 +0.3
Or see this region's nucleotide sequence