Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03033

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03032 and MPMX19_03033 overlap by 4 nucleotidesMPMX19_03033 and MPMX19_03034 are separated by 123 nucleotides MPMX19_03032: MPMX19_03032 - hypothetical protein, at 299,197 to 301,047 _03032 MPMX19_03033: MPMX19_03033 - hypothetical protein, at 301,044 to 302,054 _03033 MPMX19_03034: MPMX19_03034 - hypothetical protein, at 302,178 to 303,023 _03034 Position (kb) 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 300.160 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.161 kb on - strand, within MPMX19_03032at 300.161 kb on - strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.430 kb on + strand, within MPMX19_03032at 300.431 kb on - strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.800 kb on - strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 301.137 kb on + strandat 301.137 kb on + strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.534 kb on + strand, within MPMX19_03033at 301.534 kb on + strand, within MPMX19_03033at 301.535 kb on - strand, within MPMX19_03033at 301.549 kb on + strand, within MPMX19_03033at 301.549 kb on + strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.732 kb on + strand, within MPMX19_03033at 301.732 kb on + strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 302.045 kb on + strandat 302.049 kb on + strandat 302.050 kb on - strandat 302.050 kb on - strandat 302.070 kb on + strandat 302.070 kb on + strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.077 kb on - strandat 302.124 kb on - strandat 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.879 kb on + strand, within MPMX19_03034at 303.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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300,160 + MPMX19_03032 0.52 -0.5
300,160 + MPMX19_03032 0.52 +0.8
300,160 + MPMX19_03032 0.52 -0.4
300,160 + MPMX19_03032 0.52 +0.4
300,161 - MPMX19_03032 0.52 +1.3
300,161 - MPMX19_03032 0.52 +0.6
300,310 + MPMX19_03032 0.60 -1.9
300,310 + MPMX19_03032 0.60 +0.2
300,310 + MPMX19_03032 0.60 +0.3
300,310 + MPMX19_03032 0.60 -1.9
300,310 + MPMX19_03032 0.60 -0.6
300,311 - MPMX19_03032 0.60 -0.9
300,311 - MPMX19_03032 0.60 +0.4
300,311 - MPMX19_03032 0.60 +0.2
300,311 - MPMX19_03032 0.60 +0.5
300,311 - MPMX19_03032 0.60 -0.3
300,311 - MPMX19_03032 0.60 -0.9
300,311 - MPMX19_03032 0.60 +0.2
300,311 - MPMX19_03032 0.60 +0.3
300,430 + MPMX19_03032 0.67 +0.3
300,431 - MPMX19_03032 0.67 +0.6
300,454 + MPMX19_03032 0.68 -1.4
300,454 + MPMX19_03032 0.68 -1.4
300,454 + MPMX19_03032 0.68 -0.6
300,454 + MPMX19_03032 0.68 +1.6
300,454 + MPMX19_03032 0.68 -0.6
300,454 + MPMX19_03032 0.68 +0.3
300,454 + MPMX19_03032 0.68 -0.2
300,454 + MPMX19_03032 0.68 +1.1
300,454 + MPMX19_03032 0.68 -0.4
300,454 + MPMX19_03032 0.68 -1.7
300,454 + MPMX19_03032 0.68 -0.3
300,454 + MPMX19_03032 0.68 +0.2
300,454 + MPMX19_03032 0.68 -1.7
300,455 - MPMX19_03032 0.68 +0.3
300,455 - MPMX19_03032 0.68 +0.5
300,455 - MPMX19_03032 0.68 +1.2
300,455 - MPMX19_03032 0.68 -2.5
300,455 - MPMX19_03032 0.68 +0.2
300,455 - MPMX19_03032 0.68 +0.3
300,455 - MPMX19_03032 0.68 -0.5
300,455 - MPMX19_03032 0.68 -0.7
300,455 - MPMX19_03032 0.68 -0.1
300,455 - MPMX19_03032 0.68 -0.5
300,455 - MPMX19_03032 0.68 -0.8
300,800 - MPMX19_03032 0.87 +1.3
300,808 + MPMX19_03032 0.87 -1.1
300,808 + MPMX19_03032 0.87 +0.4
300,808 + MPMX19_03032 0.87 +1.2
300,808 + MPMX19_03032 0.87 +0.3
300,808 + MPMX19_03032 0.87 -0.4
300,808 + MPMX19_03032 0.87 +0.1
300,808 + MPMX19_03032 0.87 -0.9
300,808 + MPMX19_03032 0.87 -0.7
300,809 - MPMX19_03032 0.87 +0.1
300,809 - MPMX19_03032 0.87 +1.1
300,809 - MPMX19_03032 0.87 +0.2
300,809 - MPMX19_03032 0.87 -1.4
300,809 - MPMX19_03032 0.87 +0.6
300,809 - MPMX19_03032 0.87 +0.6
301,137 + -1.1
301,137 + +1.6
301,138 - +0.3
301,138 - -0.7
301,138 - -0.7
301,138 - +0.2
301,138 - -0.7
301,138 - -1.7
301,534 + MPMX19_03033 0.48 +0.6
301,534 + MPMX19_03033 0.48 +0.9
301,535 - MPMX19_03033 0.49 +0.6
301,549 + MPMX19_03033 0.50 -0.4
301,549 + MPMX19_03033 0.50 -0.9
301,550 - MPMX19_03033 0.50 +2.0
301,550 - MPMX19_03033 0.50 +1.6
301,550 - MPMX19_03033 0.50 +2.6
301,550 - MPMX19_03033 0.50 -1.6
301,732 + MPMX19_03033 0.68 +0.4
301,732 + MPMX19_03033 0.68 +0.9
301,733 - MPMX19_03033 0.68 +2.0
301,733 - MPMX19_03033 0.68 -0.9
301,733 - MPMX19_03033 0.68 +0.5
301,733 - MPMX19_03033 0.68 +1.1
301,733 - MPMX19_03033 0.68 +0.6
301,733 - MPMX19_03033 0.68 +0.9
301,733 - MPMX19_03033 0.68 +0.8
301,733 - MPMX19_03033 0.68 -0.4
301,880 - MPMX19_03033 0.83 +1.1
301,880 - MPMX19_03033 0.83 -0.1
301,880 - MPMX19_03033 0.83 -0.8
301,880 - MPMX19_03033 0.83 +0.6
301,880 - MPMX19_03033 0.83 -1.7
302,045 + +0.1
302,049 + +1.6
302,050 - -0.2
302,050 - -0.1
302,070 + +0.1
302,070 + +0.3
302,071 - +0.1
302,071 - -0.4
302,071 - -0.1
302,071 - +2.0
302,071 - -1.9
302,071 - +1.4
302,077 - -0.7
302,124 - -1.2
302,588 + MPMX19_03034 0.48 -2.9
302,588 + MPMX19_03034 0.48 -0.7
302,588 + MPMX19_03034 0.48 +0.6
302,588 + MPMX19_03034 0.48 +0.9
302,588 + MPMX19_03034 0.48 -0.8
302,588 + MPMX19_03034 0.48 -0.6
302,588 + MPMX19_03034 0.48 +0.6
302,588 + MPMX19_03034 0.48 -0.9
302,588 + MPMX19_03034 0.48 -0.9
302,588 + MPMX19_03034 0.48 -0.7
302,588 + MPMX19_03034 0.48 +0.3
302,589 - MPMX19_03034 0.49 -0.9
302,589 - MPMX19_03034 0.49 -2.4
302,589 - MPMX19_03034 0.49 -0.4
302,589 - MPMX19_03034 0.49 -0.1
302,589 - MPMX19_03034 0.49 -0.9
302,589 - MPMX19_03034 0.49 -0.9
302,589 - MPMX19_03034 0.49 -0.9
302,589 - MPMX19_03034 0.49 -0.9
302,589 - MPMX19_03034 0.49 +0.1
302,589 - MPMX19_03034 0.49 -1.2
302,589 - MPMX19_03034 0.49 +0.2
302,589 - MPMX19_03034 0.49 +1.6
302,589 - MPMX19_03034 0.49 +0.9
302,589 - MPMX19_03034 0.49 -0.3
302,589 - MPMX19_03034 0.49 -0.1
302,589 - MPMX19_03034 0.49 -0.1
302,589 - MPMX19_03034 0.49 -0.6
302,589 - MPMX19_03034 0.49 +1.1
302,589 - MPMX19_03034 0.49 +0.2
302,589 - MPMX19_03034 0.49 +0.0
302,589 - MPMX19_03034 0.49 -1.2
302,589 - MPMX19_03034 0.49 -0.4
302,879 + MPMX19_03034 0.83 -0.8
303,033 + +0.6

Or see this region's nucleotide sequence