Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02915 and MPMX19_02916 overlap by 4 nucleotides MPMX19_02916 and MPMX19_02917 overlap by 4 nucleotides MPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides MPMX19_02918 and MPMX19_02919 are separated by 16 nucleotides
MPMX19_02915: MPMX19_02915 - hypothetical protein, at 169,121 to 170,047
_02915
MPMX19_02916: MPMX19_02916 - hypothetical protein, at 170,044 to 170,898
_02916
MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899
_02917
MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804
_02918
MPMX19_02919: MPMX19_02919 - hypothetical protein, at 172,821 to 173,837
_02919
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.007 kb on - strand at 170.007 kb on - strand at 170.007 kb on - strand at 170.318 kb on + strand, within MPMX19_02916 at 170.319 kb on - strand, within MPMX19_02916 at 170.319 kb on - strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.381 kb on - strand, within MPMX19_02916 at 170.381 kb on - strand, within MPMX19_02916 at 170.412 kb on - strand, within MPMX19_02916 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.487 kb on + strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 170,006 + -1.7 170,006 + +0.6 170,006 + +0.3 170,006 + -1.7 170,006 + -0.9 170,007 - -1.7 170,007 - +0.1 170,007 - -0.3 170,318 + MPMX19_02916 0.32 +0.0 170,319 - MPMX19_02916 0.32 +0.6 170,319 - MPMX19_02916 0.32 -0.3 170,380 + MPMX19_02916 0.39 -0.9 170,380 + MPMX19_02916 0.39 +0.1 170,380 + MPMX19_02916 0.39 -2.7 170,380 + MPMX19_02916 0.39 -1.7 170,381 - MPMX19_02916 0.39 -1.9 170,381 - MPMX19_02916 0.39 +0.2 170,412 - MPMX19_02916 0.43 -0.9 171,040 + MPMX19_02917 0.14 +0.2 171,040 + MPMX19_02917 0.14 -1.5 171,040 + MPMX19_02917 0.14 -0.4 171,040 + MPMX19_02917 0.14 -0.4 171,040 + MPMX19_02917 0.14 +0.8 171,040 + MPMX19_02917 0.14 +0.1 171,040 + MPMX19_02917 0.14 -0.4 171,041 - MPMX19_02917 0.15 -0.8 171,041 - MPMX19_02917 0.15 -0.4 171,041 - MPMX19_02917 0.15 -0.4 171,041 - MPMX19_02917 0.15 +0.3 171,041 - MPMX19_02917 0.15 +0.4 171,041 - MPMX19_02917 0.15 -1.0 171,487 + MPMX19_02917 0.59 -0.2 171,488 - MPMX19_02917 0.59 -1.0 171,488 - MPMX19_02917 0.59 -1.9 171,598 + MPMX19_02917 0.70 -0.3 171,598 + MPMX19_02917 0.70 -0.1 171,598 + MPMX19_02917 0.70 +2.0 171,598 + MPMX19_02917 0.70 -0.6 171,598 + MPMX19_02917 0.70 +1.0 171,599 - MPMX19_02917 0.70 -0.2 171,599 - MPMX19_02917 0.70 +1.1 172,413 + MPMX19_02918 0.57 +0.7 172,413 + MPMX19_02918 0.57 -1.1 172,413 + MPMX19_02918 0.57 -0.2 172,413 + MPMX19_02918 0.57 -0.8 172,413 + MPMX19_02918 0.57 -1.4 172,413 + MPMX19_02918 0.57 -0.1 172,413 + MPMX19_02918 0.57 -0.1 172,413 + MPMX19_02918 0.57 -0.0 172,413 + MPMX19_02918 0.57 -0.4 172,414 - MPMX19_02918 0.57 +0.6 172,414 - MPMX19_02918 0.57 -0.4 172,414 - MPMX19_02918 0.57 -0.8 172,414 - MPMX19_02918 0.57 +0.6 172,701 + MPMX19_02918 0.89 -0.9 172,701 + MPMX19_02918 0.89 +0.1 172,702 - MPMX19_02918 0.89 -0.7 172,702 - MPMX19_02918 0.89 +0.9 172,702 - MPMX19_02918 0.89 -0.4 172,791 + +0.6 172,791 + +0.0 172,791 + -0.4 172,791 + -0.2 172,791 + -0.4 172,791 + -1.6 172,791 + -1.9 172,791 + -0.9 172,791 + -1.7 172,791 + -0.6 172,791 + +1.6 172,791 + +0.0 172,791 + -1.6 172,792 - -0.8 172,792 - -0.5 172,792 - -0.5 172,792 - +0.1 172,792 - +0.1 172,792 - -0.8 172,792 - +0.8 172,792 - -1.1 172,792 - -0.7 172,792 - +0.6 172,792 - -0.8 172,792 - -0.4 172,792 - +0.0
Or see this region's nucleotide sequence