Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02530 and MPMX19_02531 are separated by 5 nucleotides MPMX19_02531 and MPMX19_02532 overlap by 4 nucleotides MPMX19_02532 and MPMX19_02533 are separated by 7 nucleotides
MPMX19_02530: MPMX19_02530 - Heme exporter protein C, at 2,649,928 to 2,650,686
_02530
MPMX19_02531: MPMX19_02531 - hypothetical protein, at 2,650,692 to 2,650,937
_02531
MPMX19_02532: MPMX19_02532 - Cytochrome c-type biogenesis protein CcmE, at 2,650,934 to 2,651,398
_02532
MPMX19_02533: MPMX19_02533 - Cytochrome c-type biogenesis protein CcmF, at 2,651,406 to 2,653,412
_02533
Position (kb)
2650
2651
2652 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2650.684 kb on + strand at 2650.684 kb on + strand at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.958 kb on + strand at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 2,650,684 + +0.2 2,650,684 + +0.0 2,650,886 + MPMX19_02531 0.79 +1.5 2,650,886 + MPMX19_02531 0.79 -1.4 2,650,886 + MPMX19_02531 0.79 +0.3 2,650,886 + MPMX19_02531 0.79 +1.0 2,650,886 + MPMX19_02531 0.79 +2.9 2,650,958 + -2.2 2,651,351 + MPMX19_02532 0.90 -0.2 2,651,351 + MPMX19_02532 0.90 +1.2 2,651,351 + MPMX19_02532 0.90 +0.7 2,651,351 + MPMX19_02532 0.90 -1.6 2,651,351 + MPMX19_02532 0.90 +0.5 2,651,352 - -0.7
Or see this region's nucleotide sequence