Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06668

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06667 and MPMX19_06668 are separated by 44 nucleotidesMPMX19_06668 and MPMX19_06669 are separated by 182 nucleotides MPMX19_06667: MPMX19_06667 - Beta-barrel assembly-enhancing protease, at 226,597 to 228,810 _06667 MPMX19_06668: MPMX19_06668 - 2-deoxystreptamine glucosyltransferase, at 228,855 to 230,084 _06668 MPMX19_06669: MPMX19_06669 - hypothetical protein, at 230,267 to 231,907 _06669 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.896 kb on + strand, within MPMX19_06667at 227.896 kb on + strand, within MPMX19_06667at 227.896 kb on + strand, within MPMX19_06667at 227.896 kb on + strand, within MPMX19_06667at 227.896 kb on + strand, within MPMX19_06667at 227.896 kb on + strand, within MPMX19_06667at 227.896 kb on + strand, within MPMX19_06667at 227.897 kb on - strand, within MPMX19_06667at 227.897 kb on - strand, within MPMX19_06667at 227.897 kb on - strand, within MPMX19_06667at 227.897 kb on - strand, within MPMX19_06667at 227.897 kb on - strand, within MPMX19_06667at 227.992 kb on + strand, within MPMX19_06667at 227.992 kb on + strand, within MPMX19_06667at 227.992 kb on + strand, within MPMX19_06667at 227.992 kb on + strand, within MPMX19_06667at 227.992 kb on + strand, within MPMX19_06667at 227.992 kb on + strand, within MPMX19_06667at 227.993 kb on - strand, within MPMX19_06667at 227.993 kb on - strand, within MPMX19_06667at 227.993 kb on - strand, within MPMX19_06667at 227.993 kb on - strand, within MPMX19_06667at 227.993 kb on - strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.034 kb on + strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.035 kb on - strand, within MPMX19_06667at 228.253 kb on + strand, within MPMX19_06667at 228.253 kb on + strand, within MPMX19_06667at 228.253 kb on + strand, within MPMX19_06667at 228.254 kb on - strand, within MPMX19_06667at 228.254 kb on - strand, within MPMX19_06667at 228.254 kb on - strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.516 kb on + strand, within MPMX19_06667at 228.517 kb on - strand, within MPMX19_06667at 228.517 kb on - strand, within MPMX19_06667at 228.517 kb on - strand, within MPMX19_06667at 228.517 kb on - strand, within MPMX19_06667at 228.517 kb on - strand, within MPMX19_06667at 228.695 kb on - strandat 229.253 kb on + strand, within MPMX19_06668at 229.253 kb on + strand, within MPMX19_06668at 229.253 kb on + strand, within MPMX19_06668at 229.253 kb on + strand, within MPMX19_06668at 229.254 kb on - strand, within MPMX19_06668at 229.254 kb on - strand, within MPMX19_06668at 229.254 kb on - strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.661 kb on - strand, within MPMX19_06668at 229.661 kb on - strand, within MPMX19_06668at 229.661 kb on - strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.780 kb on + strand, within MPMX19_06668at 229.780 kb on + strand, within MPMX19_06668at 229.781 kb on - strand, within MPMX19_06668at 229.781 kb on - strand, within MPMX19_06668at 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.060 kb on - strandat 230.060 kb on - strandat 230.060 kb on - strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.591 kb on + strand, within MPMX19_06669at 230.591 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.837 kb on + strand, within MPMX19_06669at 230.837 kb on + strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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227,896 + MPMX19_06667 0.59 +1.3
227,896 + MPMX19_06667 0.59 -2.1
227,896 + MPMX19_06667 0.59 +0.4
227,896 + MPMX19_06667 0.59 -0.6
227,896 + MPMX19_06667 0.59 -0.3
227,896 + MPMX19_06667 0.59 +0.6
227,896 + MPMX19_06667 0.59 +0.5
227,897 - MPMX19_06667 0.59 +0.3
227,897 - MPMX19_06667 0.59 +1.8
227,897 - MPMX19_06667 0.59 -1.3
227,897 - MPMX19_06667 0.59 +0.6
227,897 - MPMX19_06667 0.59 -1.0
227,992 + MPMX19_06667 0.63 +0.3
227,992 + MPMX19_06667 0.63 +0.3
227,992 + MPMX19_06667 0.63 +1.3
227,992 + MPMX19_06667 0.63 -0.3
227,992 + MPMX19_06667 0.63 -0.1
227,992 + MPMX19_06667 0.63 +0.3
227,993 - MPMX19_06667 0.63 -0.1
227,993 - MPMX19_06667 0.63 -0.3
227,993 - MPMX19_06667 0.63 -1.6
227,993 - MPMX19_06667 0.63 -1.1
227,993 - MPMX19_06667 0.63 +0.3
228,034 + MPMX19_06667 0.65 -0.3
228,034 + MPMX19_06667 0.65 +0.1
228,034 + MPMX19_06667 0.65 -0.7
228,034 + MPMX19_06667 0.65 -0.1
228,034 + MPMX19_06667 0.65 +1.5
228,034 + MPMX19_06667 0.65 -1.3
228,034 + MPMX19_06667 0.65 +0.5
228,034 + MPMX19_06667 0.65 -0.1
228,034 + MPMX19_06667 0.65 -0.9
228,034 + MPMX19_06667 0.65 +1.3
228,034 + MPMX19_06667 0.65 +0.3
228,034 + MPMX19_06667 0.65 +1.0
228,034 + MPMX19_06667 0.65 -1.7
228,035 - MPMX19_06667 0.65 -0.0
228,035 - MPMX19_06667 0.65 -0.4
228,035 - MPMX19_06667 0.65 -0.6
228,035 - MPMX19_06667 0.65 +0.7
228,035 - MPMX19_06667 0.65 -0.3
228,035 - MPMX19_06667 0.65 +2.1
228,035 - MPMX19_06667 0.65 -0.5
228,035 - MPMX19_06667 0.65 +0.3
228,035 - MPMX19_06667 0.65 +0.0
228,035 - MPMX19_06667 0.65 -0.6
228,035 - MPMX19_06667 0.65 -1.6
228,035 - MPMX19_06667 0.65 +0.8
228,035 - MPMX19_06667 0.65 +0.8
228,035 - MPMX19_06667 0.65 -0.6
228,035 - MPMX19_06667 0.65 +0.5
228,035 - MPMX19_06667 0.65 +0.8
228,035 - MPMX19_06667 0.65 -0.2
228,035 - MPMX19_06667 0.65 -0.1
228,253 + MPMX19_06667 0.75 +0.3
228,253 + MPMX19_06667 0.75 -0.7
228,253 + MPMX19_06667 0.75 -0.2
228,254 - MPMX19_06667 0.75 -0.3
228,254 - MPMX19_06667 0.75 +1.0
228,254 - MPMX19_06667 0.75 -0.3
228,516 + MPMX19_06667 0.87 +0.8
228,516 + MPMX19_06667 0.87 -0.7
228,516 + MPMX19_06667 0.87 -2.1
228,516 + MPMX19_06667 0.87 +0.6
228,516 + MPMX19_06667 0.87 -0.6
228,516 + MPMX19_06667 0.87 +0.5
228,516 + MPMX19_06667 0.87 +0.3
228,517 - MPMX19_06667 0.87 -0.9
228,517 - MPMX19_06667 0.87 +1.0
228,517 - MPMX19_06667 0.87 -1.2
228,517 - MPMX19_06667 0.87 +0.7
228,517 - MPMX19_06667 0.87 -0.1
228,695 - -1.3
229,253 + MPMX19_06668 0.32 -1.2
229,253 + MPMX19_06668 0.32 -0.7
229,253 + MPMX19_06668 0.32 +1.3
229,253 + MPMX19_06668 0.32 +1.0
229,254 - MPMX19_06668 0.32 +0.7
229,254 - MPMX19_06668 0.32 -0.4
229,254 - MPMX19_06668 0.32 -0.4
229,660 + MPMX19_06668 0.65 +1.0
229,660 + MPMX19_06668 0.65 -2.3
229,660 + MPMX19_06668 0.65 -0.2
229,660 + MPMX19_06668 0.65 -1.3
229,660 + MPMX19_06668 0.65 -0.1
229,661 - MPMX19_06668 0.66 +0.6
229,661 - MPMX19_06668 0.66 -1.2
229,661 - MPMX19_06668 0.66 -2.1
229,678 + MPMX19_06668 0.67 -2.6
229,678 + MPMX19_06668 0.67 -0.5
229,678 + MPMX19_06668 0.67 -0.6
229,678 + MPMX19_06668 0.67 -0.4
229,678 + MPMX19_06668 0.67 -1.7
229,678 + MPMX19_06668 0.67 -1.3
229,678 + MPMX19_06668 0.67 -0.3
229,678 + MPMX19_06668 0.67 -2.1
229,678 + MPMX19_06668 0.67 -1.0
229,678 + MPMX19_06668 0.67 -0.3
229,678 + MPMX19_06668 0.67 -0.7
229,679 - MPMX19_06668 0.67 +1.5
229,679 - MPMX19_06668 0.67 -0.6
229,679 - MPMX19_06668 0.67 -2.6
229,679 - MPMX19_06668 0.67 -2.6
229,679 - MPMX19_06668 0.67 +0.0
229,679 - MPMX19_06668 0.67 -0.7
229,720 + MPMX19_06668 0.70 +0.3
229,720 + MPMX19_06668 0.70 -0.6
229,720 + MPMX19_06668 0.70 +0.8
229,720 + MPMX19_06668 0.70 +0.7
229,720 + MPMX19_06668 0.70 -2.1
229,720 + MPMX19_06668 0.70 +0.3
229,720 + MPMX19_06668 0.70 -0.7
229,720 + MPMX19_06668 0.70 -1.3
229,720 + MPMX19_06668 0.70 -0.3
229,721 - MPMX19_06668 0.70 -0.0
229,721 - MPMX19_06668 0.70 +0.7
229,721 - MPMX19_06668 0.70 -0.5
229,721 - MPMX19_06668 0.70 -1.3
229,721 - MPMX19_06668 0.70 -0.2
229,721 - MPMX19_06668 0.70 -1.1
229,721 - MPMX19_06668 0.70 +1.3
229,721 - MPMX19_06668 0.70 -0.1
229,721 - MPMX19_06668 0.70 +0.3
229,721 - MPMX19_06668 0.70 -0.7
229,721 - MPMX19_06668 0.70 -1.6
229,721 - MPMX19_06668 0.70 -0.5
229,721 - MPMX19_06668 0.70 +0.9
229,721 - MPMX19_06668 0.70 -1.0
229,721 - MPMX19_06668 0.70 +0.3
229,780 + MPMX19_06668 0.75 -0.7
229,780 + MPMX19_06668 0.75 -0.3
229,781 - MPMX19_06668 0.75 -1.3
229,781 - MPMX19_06668 0.75 +1.3
230,059 + -0.1
230,059 + -2.2
230,059 + -0.7
230,059 + +0.7
230,059 + +0.0
230,059 + -0.3
230,059 + -0.3
230,059 + -2.9
230,059 + -1.3
230,059 + -1.1
230,059 + -0.3
230,059 + +0.4
230,060 - -1.1
230,060 - -0.3
230,060 - -0.1
230,271 + -0.2
230,271 + +1.9
230,271 + -1.4
230,271 + -2.7
230,271 + -1.2
230,271 + +0.3
230,271 + -1.3
230,271 + -0.5
230,271 + +1.8
230,271 + -0.6
230,271 + +0.8
230,272 - +0.6
230,272 - -0.5
230,272 - -0.2
230,272 - -1.7
230,272 - -0.0
230,272 - +0.3
230,272 - -0.3
230,272 - -0.0
230,272 - +0.3
230,387 + -0.2
230,387 + -0.7
230,387 + -0.6
230,387 + +1.0
230,387 + +0.3
230,387 + +0.7
230,388 - -1.0
230,388 - +1.8
230,388 - -1.7
230,388 - -0.7
230,388 - +1.3
230,388 - -1.0
230,388 - -0.3
230,388 - -0.6
230,388 - +1.1
230,388 - -0.6
230,591 + MPMX19_06669 0.20 +0.1
230,591 + MPMX19_06669 0.20 +1.0
230,732 + MPMX19_06669 0.28 -0.3
230,732 + MPMX19_06669 0.28 +0.6
230,732 + MPMX19_06669 0.28 +0.3
230,732 + MPMX19_06669 0.28 +1.8
230,733 - MPMX19_06669 0.28 +0.8
230,733 - MPMX19_06669 0.28 -1.7
230,733 - MPMX19_06669 0.28 -1.9
230,733 - MPMX19_06669 0.28 +0.1
230,837 + MPMX19_06669 0.35 -0.7
230,837 + MPMX19_06669 0.35 +0.7
230,838 - MPMX19_06669 0.35 -0.0
230,838 - MPMX19_06669 0.35 -0.6
230,838 - MPMX19_06669 0.35 +0.9
230,838 - MPMX19_06669 0.35 -0.1
230,999 + MPMX19_06669 0.45 +0.1
230,999 + MPMX19_06669 0.45 -0.2
230,999 + MPMX19_06669 0.45 -1.1
230,999 + MPMX19_06669 0.45 -1.4
230,999 + MPMX19_06669 0.45 +0.3
230,999 + MPMX19_06669 0.45 -0.3
230,999 + MPMX19_06669 0.45 +1.5
231,000 - MPMX19_06669 0.45 -0.4
231,000 - MPMX19_06669 0.45 -1.1
231,000 - MPMX19_06669 0.45 -0.6
231,000 - MPMX19_06669 0.45 -0.4
231,000 - MPMX19_06669 0.45 -0.1

Or see this region's nucleotide sequence