Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06517

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06515 and MPMX19_06516 are separated by 30 nucleotidesMPMX19_06516 and MPMX19_06517 are separated by 51 nucleotidesMPMX19_06517 and MPMX19_06518 overlap by 20 nucleotidesMPMX19_06518 and MPMX19_06519 are separated by 31 nucleotides MPMX19_06515: MPMX19_06515 - hypothetical protein, at 301,120 to 301,668 _06515 MPMX19_06516: MPMX19_06516 - D-methionine-binding lipoprotein MetQ, at 301,699 to 302,526 _06516 MPMX19_06517: MPMX19_06517 - Vitamin B12 import ATP-binding protein BtuD, at 302,578 to 303,696 _06517 MPMX19_06518: MPMX19_06518 - Methionine import system permease protein MetP, at 303,677 to 304,333 _06518 MPMX19_06519: MPMX19_06519 - HTH-type transcriptional repressor NagR, at 304,365 to 305,084 _06519 Position (kb) 302 303 304Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 301.715 kb on + strandat 301.715 kb on + strandat 301.716 kb on - strandat 301.968 kb on + strand, within MPMX19_06516at 301.968 kb on + strand, within MPMX19_06516at 301.969 kb on - strand, within MPMX19_06516at 301.969 kb on - strand, within MPMX19_06516at 302.005 kb on + strand, within MPMX19_06516at 302.006 kb on - strand, within MPMX19_06516at 302.006 kb on - strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.053 kb on + strand, within MPMX19_06516at 302.053 kb on + strand, within MPMX19_06516at 302.054 kb on - strand, within MPMX19_06516at 302.054 kb on - strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.194 kb on + strand, within MPMX19_06516at 302.194 kb on + strand, within MPMX19_06516at 302.195 kb on - strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.285 kb on - strand, within MPMX19_06516at 302.285 kb on - strand, within MPMX19_06516at 302.568 kb on + strandat 302.568 kb on + strandat 302.568 kb on + strandat 302.569 kb on - strandat 302.569 kb on - strandat 302.604 kb on + strandat 302.604 kb on + strandat 302.605 kb on - strandat 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.699 kb on - strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.914 kb on - strand, within MPMX19_06517at 302.914 kb on - strand, within MPMX19_06517at 302.914 kb on - strand, within MPMX19_06517at 303.067 kb on + strand, within MPMX19_06517at 303.676 kb on + strandat 303.676 kb on + strandat 303.701 kb on + strandat 303.702 kb on - strandat 303.815 kb on + strand, within MPMX19_06518at 303.816 kb on - strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.987 kb on - strand, within MPMX19_06518at 303.987 kb on - strand, within MPMX19_06518at 304.218 kb on - strand, within MPMX19_06518at 304.226 kb on + strand, within MPMX19_06518at 304.226 kb on + strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.367 kb on - strandat 304.399 kb on + strandat 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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301,715 + -0.4
301,715 + +1.8
301,716 - +1.2
301,968 + MPMX19_06516 0.32 -1.0
301,968 + MPMX19_06516 0.32 -2.6
301,969 - MPMX19_06516 0.33 +0.4
301,969 - MPMX19_06516 0.33 -0.4
302,005 + MPMX19_06516 0.37 +0.2
302,006 - MPMX19_06516 0.37 -0.2
302,006 - MPMX19_06516 0.37 -0.2
302,032 + MPMX19_06516 0.40 +0.4
302,032 + MPMX19_06516 0.40 -0.6
302,032 + MPMX19_06516 0.40 -2.4
302,032 + MPMX19_06516 0.40 +0.2
302,032 + MPMX19_06516 0.40 -0.2
302,032 + MPMX19_06516 0.40 -0.6
302,032 + MPMX19_06516 0.40 -0.4
302,032 + MPMX19_06516 0.40 +0.4
302,032 + MPMX19_06516 0.40 -1.3
302,032 + MPMX19_06516 0.40 +0.1
302,032 + MPMX19_06516 0.40 -0.3
302,032 + MPMX19_06516 0.40 +0.3
302,033 - MPMX19_06516 0.40 -0.4
302,033 - MPMX19_06516 0.40 +1.2
302,033 - MPMX19_06516 0.40 -0.3
302,033 - MPMX19_06516 0.40 -0.6
302,033 - MPMX19_06516 0.40 -0.3
302,033 - MPMX19_06516 0.40 -1.4
302,033 - MPMX19_06516 0.40 -0.2
302,033 - MPMX19_06516 0.40 -0.7
302,033 - MPMX19_06516 0.40 +0.3
302,033 - MPMX19_06516 0.40 -0.9
302,033 - MPMX19_06516 0.40 +0.4
302,033 - MPMX19_06516 0.40 -0.2
302,033 - MPMX19_06516 0.40 -0.4
302,033 - MPMX19_06516 0.40 -1.1
302,033 - MPMX19_06516 0.40 +0.0
302,033 - MPMX19_06516 0.40 +0.4
302,053 + MPMX19_06516 0.43 +0.4
302,053 + MPMX19_06516 0.43 -0.5
302,054 - MPMX19_06516 0.43 -0.7
302,054 - MPMX19_06516 0.43 -0.3
302,065 + MPMX19_06516 0.44 -0.6
302,065 + MPMX19_06516 0.44 -1.6
302,065 + MPMX19_06516 0.44 -2.7
302,065 + MPMX19_06516 0.44 -1.2
302,065 + MPMX19_06516 0.44 -0.7
302,065 + MPMX19_06516 0.44 -0.0
302,065 + MPMX19_06516 0.44 -1.4
302,065 + MPMX19_06516 0.44 -0.3
302,065 + MPMX19_06516 0.44 +0.4
302,065 + MPMX19_06516 0.44 +0.8
302,065 + MPMX19_06516 0.44 +1.3
302,065 + MPMX19_06516 0.44 +0.1
302,065 + MPMX19_06516 0.44 -1.6
302,066 - MPMX19_06516 0.44 -1.4
302,066 - MPMX19_06516 0.44 -1.6
302,066 - MPMX19_06516 0.44 +0.9
302,066 - MPMX19_06516 0.44 -3.0
302,066 - MPMX19_06516 0.44 +0.1
302,066 - MPMX19_06516 0.44 +0.8
302,066 - MPMX19_06516 0.44 -2.2
302,066 - MPMX19_06516 0.44 -0.3
302,066 - MPMX19_06516 0.44 -0.3
302,066 - MPMX19_06516 0.44 -0.4
302,066 - MPMX19_06516 0.44 +0.1
302,066 - MPMX19_06516 0.44 -0.6
302,066 - MPMX19_06516 0.44 +0.4
302,066 - MPMX19_06516 0.44 -0.2
302,194 + MPMX19_06516 0.60 +0.4
302,194 + MPMX19_06516 0.60 -0.1
302,195 - MPMX19_06516 0.60 -1.4
302,284 + MPMX19_06516 0.71 +0.3
302,284 + MPMX19_06516 0.71 +0.3
302,284 + MPMX19_06516 0.71 +1.9
302,284 + MPMX19_06516 0.71 -0.2
302,285 - MPMX19_06516 0.71 -0.0
302,285 - MPMX19_06516 0.71 -0.9
302,568 + +0.4
302,568 + +0.4
302,568 + +1.0
302,569 - -0.1
302,569 - -0.5
302,604 + +1.0
302,604 + +1.6
302,605 - +0.2
302,698 + MPMX19_06517 0.11 +0.1
302,698 + MPMX19_06517 0.11 +1.3
302,698 + MPMX19_06517 0.11 -1.4
302,698 + MPMX19_06517 0.11 +0.4
302,698 + MPMX19_06517 0.11 -0.6
302,698 + MPMX19_06517 0.11 +0.1
302,699 - MPMX19_06517 0.11 +0.3
302,913 + MPMX19_06517 0.30 -0.8
302,913 + MPMX19_06517 0.30 +1.2
302,913 + MPMX19_06517 0.30 -0.6
302,913 + MPMX19_06517 0.30 +1.6
302,914 - MPMX19_06517 0.30 +1.2
302,914 - MPMX19_06517 0.30 -1.0
302,914 - MPMX19_06517 0.30 +0.7
303,067 + MPMX19_06517 0.44 +0.2
303,676 + -0.5
303,676 + -1.2
303,701 + -1.7
303,702 - -1.2
303,815 + MPMX19_06518 0.21 -0.2
303,816 - MPMX19_06518 0.21 -1.3
303,986 + MPMX19_06518 0.47 -1.9
303,986 + MPMX19_06518 0.47 +0.0
303,986 + MPMX19_06518 0.47 -0.9
303,986 + MPMX19_06518 0.47 +2.0
303,986 + MPMX19_06518 0.47 +0.1
303,986 + MPMX19_06518 0.47 -0.2
303,986 + MPMX19_06518 0.47 +0.4
303,987 - MPMX19_06518 0.47 -1.0
303,987 - MPMX19_06518 0.47 +0.4
304,218 - MPMX19_06518 0.82 +0.2
304,226 + MPMX19_06518 0.84 +0.0
304,226 + MPMX19_06518 0.84 +0.7
304,227 - MPMX19_06518 0.84 +2.0
304,227 - MPMX19_06518 0.84 +0.0
304,227 - MPMX19_06518 0.84 -0.2
304,227 - MPMX19_06518 0.84 -1.3
304,227 - MPMX19_06518 0.84 -1.2
304,227 - MPMX19_06518 0.84 -2.6
304,367 - +1.4
304,399 + +0.4
304,597 + MPMX19_06519 0.32 -1.8
304,597 + MPMX19_06519 0.32 +1.0
304,597 + MPMX19_06519 0.32 +1.4
304,597 + MPMX19_06519 0.32 -1.2

Or see this region's nucleotide sequence