Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06253

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06252 and MPMX19_06253 are separated by 55 nucleotidesMPMX19_06253 and MPMX19_06254 are separated by 422 nucleotides MPMX19_06252: MPMX19_06252 - hypothetical protein, at 3,280 to 3,561 _06252 MPMX19_06253: MPMX19_06253 - hypothetical protein, at 3,617 to 3,826 _06253 MPMX19_06254: MPMX19_06254 - hypothetical protein, at 4,249 to 6,270 _06254 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 2.666 kb on - strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.713 kb on + strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.714 kb on - strandat 2.914 kb on + strandat 2.915 kb on - strandat 2.992 kb on + strandat 2.992 kb on + strandat 3.095 kb on + strandat 3.095 kb on + strandat 3.095 kb on + strandat 3.095 kb on + strandat 3.095 kb on + strandat 3.096 kb on - strandat 3.096 kb on - strandat 3.124 kb on + strandat 3.125 kb on - strandat 3.125 kb on - strandat 3.161 kb on + strandat 3.161 kb on + strandat 3.162 kb on - strandat 3.163 kb on + strandat 3.163 kb on + strandat 3.163 kb on + strandat 3.163 kb on + strandat 3.163 kb on + strandat 3.163 kb on + strandat 3.163 kb on + strandat 3.164 kb on - strandat 3.164 kb on - strandat 3.164 kb on - strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.267 kb on + strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.268 kb on - strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.269 kb on + strandat 3.270 kb on - strandat 3.270 kb on - strandat 3.270 kb on - strandat 3.270 kb on - strandat 3.310 kb on + strand, within MPMX19_06252at 3.311 kb on - strand, within MPMX19_06252at 3.587 kb on + strandat 3.587 kb on + strandat 3.588 kb on - strandat 3.588 kb on - strandat 3.588 kb on - strandat 3.589 kb on + strandat 3.589 kb on + strandat 3.589 kb on + strandat 3.589 kb on + strandat 3.589 kb on + strandat 3.589 kb on + strandat 3.590 kb on - strandat 3.590 kb on - strandat 3.654 kb on + strand, within MPMX19_06253at 3.655 kb on - strand, within MPMX19_06253at 3.670 kb on + strand, within MPMX19_06253at 3.671 kb on - strand, within MPMX19_06253at 3.671 kb on - strand, within MPMX19_06253at 3.671 kb on - strand, within MPMX19_06253at 3.673 kb on - strand, within MPMX19_06253at 3.813 kb on + strandat 3.814 kb on - strandat 4.033 kb on - strandat 4.133 kb on + strandat 4.133 kb on + strandat 4.172 kb on + strandat 4.228 kb on + strandat 4.360 kb on + strandat 4.360 kb on + strandat 4.360 kb on + strandat 4.360 kb on + strandat 4.360 kb on + strandat 4.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,666 - +0.1
2,713 + -1.6
2,713 + +0.2
2,713 + +0.2
2,713 + +0.4
2,713 + -0.5
2,713 + -1.2
2,713 + +0.5
2,713 + +0.4
2,714 - +2.0
2,714 - +1.3
2,714 - +1.8
2,714 - -0.6
2,714 - -1.7
2,714 - -1.9
2,714 - +0.3
2,714 - -1.9
2,714 - -0.6
2,914 + -0.6
2,915 - -0.8
2,992 + -0.3
2,992 + +0.2
3,095 + +0.0
3,095 + -0.9
3,095 + -0.4
3,095 + +0.4
3,095 + +1.6
3,096 - -1.2
3,096 - +0.4
3,124 + +0.1
3,125 - +1.4
3,125 - -1.2
3,161 + -0.3
3,161 + -1.2
3,162 - -2.6
3,163 + -0.4
3,163 + +0.5
3,163 + +0.1
3,163 + -0.6
3,163 + +1.0
3,163 + +0.4
3,163 + +2.0
3,164 - -0.3
3,164 - +1.2
3,164 - -0.4
3,267 + +1.3
3,267 + +0.1
3,267 + +0.6
3,267 + -1.7
3,267 + +0.6
3,267 + +0.6
3,267 + -0.1
3,267 + -1.6
3,267 + -1.4
3,267 + -0.5
3,267 + -1.6
3,267 + +0.2
3,267 + +0.4
3,267 + +0.2
3,267 + -0.2
3,267 + +0.1
3,267 + -0.5
3,267 + +0.7
3,267 + +0.6
3,267 + +1.2
3,267 + -1.2
3,268 - -0.6
3,268 - -0.9
3,268 - +0.4
3,268 - +0.8
3,268 - +1.3
3,268 - -0.6
3,268 - -1.6
3,268 - -2.2
3,268 - -0.1
3,269 + +0.8
3,269 + -0.1
3,269 + -0.6
3,269 + -2.3
3,269 + -0.3
3,269 + -1.4
3,269 + +1.3
3,269 + -0.3
3,269 + -0.9
3,269 + -0.4
3,269 + -0.0
3,270 - -0.2
3,270 - -0.3
3,270 - -1.6
3,270 - -1.2
3,310 + MPMX19_06252 0.11 +0.4
3,311 - MPMX19_06252 0.11 +1.0
3,587 + -0.5
3,587 + +0.4
3,588 - +2.7
3,588 - +2.4
3,588 - -0.2
3,589 + -0.7
3,589 + +0.4
3,589 + +0.0
3,589 + +0.3
3,589 + +0.2
3,589 + +2.0
3,590 - +0.1
3,590 - +1.4
3,654 + MPMX19_06253 0.18 -1.1
3,655 - MPMX19_06253 0.18 -0.2
3,670 + MPMX19_06253 0.25 -0.5
3,671 - MPMX19_06253 0.26 -0.6
3,671 - MPMX19_06253 0.26 -1.4
3,671 - MPMX19_06253 0.26 +0.4
3,673 - MPMX19_06253 0.27 -1.9
3,813 + +0.1
3,814 - -2.4
4,033 - -0.4
4,133 + -0.7
4,133 + -0.1
4,172 + -1.2
4,228 + -1.9
4,360 + +0.8
4,360 + -0.6
4,360 + -0.3
4,360 + +0.2
4,360 + +0.4
4,361 - -0.1

Or see this region's nucleotide sequence