Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04819

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04818 and MPMX19_04819 are separated by 354 nucleotidesMPMX19_04819 and MPMX19_04820 are separated by 101 nucleotides MPMX19_04818: MPMX19_04818 - Hydroxyacylglutathione hydrolase GloC, at 222,566 to 223,198 _04818 MPMX19_04819: MPMX19_04819 - hypothetical protein, at 223,553 to 224,320 _04819 MPMX19_04820: MPMX19_04820 - Nucleoid occlusion protein, at 224,422 to 225,243 _04820 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.573 kb on - strandat 223.067 kb on + strand, within MPMX19_04818at 223.067 kb on + strand, within MPMX19_04818at 223.067 kb on + strand, within MPMX19_04818at 223.067 kb on + strand, within MPMX19_04818at 223.067 kb on + strand, within MPMX19_04818at 223.067 kb on + strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.068 kb on - strand, within MPMX19_04818at 223.175 kb on + strandat 223.175 kb on + strandat 223.175 kb on + strandat 223.175 kb on + strandat 223.175 kb on + strandat 223.175 kb on + strandat 223.176 kb on - strandat 223.176 kb on - strandat 223.176 kb on - strandat 223.176 kb on - strandat 223.197 kb on - strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.249 kb on + strandat 223.250 kb on - strandat 223.250 kb on - strandat 223.250 kb on - strandat 223.250 kb on - strandat 223.250 kb on - strandat 223.252 kb on - strandat 223.314 kb on - strandat 223.314 kb on - strandat 223.332 kb on + strandat 223.332 kb on + strandat 223.332 kb on + strandat 223.332 kb on + strandat 223.333 kb on - strandat 223.333 kb on - strandat 223.333 kb on - strandat 223.472 kb on + strandat 223.473 kb on - strandat 223.473 kb on - strandat 223.495 kb on + strandat 223.549 kb on + strandat 223.549 kb on + strandat 223.549 kb on + strandat 223.549 kb on + strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.643 kb on + strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.644 kb on - strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.691 kb on + strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.692 kb on - strand, within MPMX19_04819at 223.795 kb on - strand, within MPMX19_04819at 223.924 kb on + strand, within MPMX19_04819at 223.925 kb on - strand, within MPMX19_04819at 224.057 kb on + strand, within MPMX19_04819at 224.057 kb on + strand, within MPMX19_04819at 224.057 kb on + strand, within MPMX19_04819at 224.057 kb on + strand, within MPMX19_04819at 224.057 kb on + strand, within MPMX19_04819at 224.057 kb on + strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.058 kb on - strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.114 kb on + strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.115 kb on - strand, within MPMX19_04819at 224.303 kb on + strandat 224.304 kb on - strandat 224.304 kb on - strandat 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.754 kb on - strand, within MPMX19_04820at 224.754 kb on - strand, within MPMX19_04820at 224.754 kb on - strand, within MPMX19_04820at 224.852 kb on + strand, within MPMX19_04820at 224.852 kb on + strand, within MPMX19_04820at 224.852 kb on + strand, within MPMX19_04820at 224.853 kb on - strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 225.080 kb on + strand, within MPMX19_04820at 225.081 kb on - strand, within MPMX19_04820

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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222,572 + -0.7
222,572 + -0.4
222,572 + +0.5
222,572 + -0.8
222,572 + -1.7
222,572 + +0.8
222,572 + -0.6
222,572 + -0.7
222,572 + -0.7
222,572 + -0.3
222,572 + -2.0
222,573 - -0.1
222,573 - -0.2
222,573 - +0.3
222,573 - +0.9
222,573 - -0.7
222,573 - +0.7
222,573 - -0.9
222,573 - -0.1
223,067 + MPMX19_04818 0.79 +0.7
223,067 + MPMX19_04818 0.79 -0.4
223,067 + MPMX19_04818 0.79 -1.0
223,067 + MPMX19_04818 0.79 -0.3
223,067 + MPMX19_04818 0.79 +0.3
223,067 + MPMX19_04818 0.79 -0.9
223,068 - MPMX19_04818 0.79 +0.4
223,068 - MPMX19_04818 0.79 -0.1
223,068 - MPMX19_04818 0.79 -1.5
223,068 - MPMX19_04818 0.79 -0.7
223,068 - MPMX19_04818 0.79 +1.3
223,068 - MPMX19_04818 0.79 -0.3
223,068 - MPMX19_04818 0.79 -0.3
223,068 - MPMX19_04818 0.79 +1.0
223,175 + -0.3
223,175 + -0.4
223,175 + -1.4
223,175 + -0.5
223,175 + -0.4
223,175 + +1.5
223,176 - +0.2
223,176 - +0.4
223,176 - +0.3
223,176 - -0.0
223,197 - -1.1
223,249 + -1.7
223,249 + +0.6
223,249 + +0.3
223,249 + -0.7
223,249 + +0.9
223,249 + -1.7
223,249 + +2.0
223,249 + -0.8
223,250 - -0.7
223,250 - -0.8
223,250 - -0.7
223,250 - -0.5
223,250 - -0.0
223,252 - -0.7
223,314 - -0.4
223,314 - -0.0
223,332 + +1.9
223,332 + +0.4
223,332 + +0.2
223,332 + +0.3
223,333 - -0.4
223,333 - -0.9
223,333 - -0.7
223,472 + +0.3
223,473 - -2.0
223,473 - -0.2
223,495 + +0.7
223,549 + -1.3
223,549 + -0.3
223,549 + +0.8
223,549 + -1.4
223,550 - -0.9
223,550 - +0.1
223,550 - -0.7
223,550 - -1.0
223,550 - -0.6
223,550 - -0.4
223,550 - +0.0
223,550 - -0.5
223,550 - -0.1
223,643 + MPMX19_04819 0.12 -0.9
223,643 + MPMX19_04819 0.12 -0.0
223,643 + MPMX19_04819 0.12 +1.9
223,643 + MPMX19_04819 0.12 -0.1
223,643 + MPMX19_04819 0.12 -0.4
223,643 + MPMX19_04819 0.12 -0.8
223,643 + MPMX19_04819 0.12 +0.7
223,643 + MPMX19_04819 0.12 +0.3
223,643 + MPMX19_04819 0.12 +1.9
223,643 + MPMX19_04819 0.12 +2.2
223,643 + MPMX19_04819 0.12 -1.7
223,643 + MPMX19_04819 0.12 -1.0
223,643 + MPMX19_04819 0.12 +0.3
223,643 + MPMX19_04819 0.12 +0.8
223,644 - MPMX19_04819 0.12 +0.5
223,644 - MPMX19_04819 0.12 +0.1
223,644 - MPMX19_04819 0.12 -0.0
223,644 - MPMX19_04819 0.12 -0.1
223,644 - MPMX19_04819 0.12 -0.6
223,644 - MPMX19_04819 0.12 -1.0
223,644 - MPMX19_04819 0.12 -1.9
223,644 - MPMX19_04819 0.12 +0.5
223,644 - MPMX19_04819 0.12 -0.2
223,644 - MPMX19_04819 0.12 -1.9
223,644 - MPMX19_04819 0.12 -0.1
223,644 - MPMX19_04819 0.12 +1.5
223,644 - MPMX19_04819 0.12 +0.9
223,644 - MPMX19_04819 0.12 -1.2
223,644 - MPMX19_04819 0.12 -1.3
223,644 - MPMX19_04819 0.12 -0.1
223,644 - MPMX19_04819 0.12 +0.7
223,644 - MPMX19_04819 0.12 -2.0
223,644 - MPMX19_04819 0.12 +1.3
223,644 - MPMX19_04819 0.12 -1.5
223,691 + MPMX19_04819 0.18 -0.3
223,691 + MPMX19_04819 0.18 -0.3
223,691 + MPMX19_04819 0.18 -0.5
223,691 + MPMX19_04819 0.18 -1.7
223,691 + MPMX19_04819 0.18 +0.8
223,691 + MPMX19_04819 0.18 -1.0
223,691 + MPMX19_04819 0.18 +0.6
223,691 + MPMX19_04819 0.18 -1.0
223,691 + MPMX19_04819 0.18 -1.0
223,691 + MPMX19_04819 0.18 -2.3
223,691 + MPMX19_04819 0.18 +0.2
223,692 - MPMX19_04819 0.18 -0.6
223,692 - MPMX19_04819 0.18 -0.9
223,692 - MPMX19_04819 0.18 +0.3
223,692 - MPMX19_04819 0.18 -0.9
223,692 - MPMX19_04819 0.18 -0.7
223,692 - MPMX19_04819 0.18 -0.0
223,692 - MPMX19_04819 0.18 -1.7
223,795 - MPMX19_04819 0.32 -2.3
223,924 + MPMX19_04819 0.48 -1.7
223,925 - MPMX19_04819 0.48 +1.0
224,057 + MPMX19_04819 0.66 +0.6
224,057 + MPMX19_04819 0.66 -0.9
224,057 + MPMX19_04819 0.66 +0.3
224,057 + MPMX19_04819 0.66 -0.7
224,057 + MPMX19_04819 0.66 +0.3
224,057 + MPMX19_04819 0.66 -1.9
224,058 - MPMX19_04819 0.66 -0.1
224,058 - MPMX19_04819 0.66 -0.6
224,058 - MPMX19_04819 0.66 -1.0
224,058 - MPMX19_04819 0.66 -1.3
224,058 - MPMX19_04819 0.66 -0.1
224,058 - MPMX19_04819 0.66 -0.7
224,058 - MPMX19_04819 0.66 +0.1
224,114 + MPMX19_04819 0.73 -2.5
224,114 + MPMX19_04819 0.73 +1.9
224,114 + MPMX19_04819 0.73 -1.5
224,114 + MPMX19_04819 0.73 +1.0
224,114 + MPMX19_04819 0.73 -0.0
224,114 + MPMX19_04819 0.73 +0.2
224,114 + MPMX19_04819 0.73 -0.5
224,114 + MPMX19_04819 0.73 +0.4
224,114 + MPMX19_04819 0.73 -0.2
224,114 + MPMX19_04819 0.73 +0.1
224,114 + MPMX19_04819 0.73 +0.3
224,114 + MPMX19_04819 0.73 -2.0
224,115 - MPMX19_04819 0.73 -0.9
224,115 - MPMX19_04819 0.73 -0.6
224,115 - MPMX19_04819 0.73 -0.7
224,115 - MPMX19_04819 0.73 -0.3
224,115 - MPMX19_04819 0.73 -1.1
224,115 - MPMX19_04819 0.73 -0.2
224,115 - MPMX19_04819 0.73 +0.9
224,115 - MPMX19_04819 0.73 +0.5
224,115 - MPMX19_04819 0.73 -0.4
224,115 - MPMX19_04819 0.73 -1.7
224,115 - MPMX19_04819 0.73 -0.1
224,115 - MPMX19_04819 0.73 -0.4
224,115 - MPMX19_04819 0.73 -1.6
224,303 + -0.6
224,304 - -2.4
224,304 - +0.4
224,507 + MPMX19_04820 0.10 +0.3
224,507 + MPMX19_04820 0.10 -0.5
224,507 + MPMX19_04820 0.10 -1.3
224,507 + MPMX19_04820 0.10 -0.3
224,507 + MPMX19_04820 0.10 -2.0
224,508 - MPMX19_04820 0.10 +0.0
224,508 - MPMX19_04820 0.10 -0.2
224,508 - MPMX19_04820 0.10 +0.0
224,508 - MPMX19_04820 0.10 -1.0
224,508 - MPMX19_04820 0.10 +0.5
224,508 - MPMX19_04820 0.10 +1.5
224,508 - MPMX19_04820 0.10 +1.5
224,508 - MPMX19_04820 0.10 +0.7
224,508 - MPMX19_04820 0.10 -0.4
224,508 - MPMX19_04820 0.10 +0.5
224,508 - MPMX19_04820 0.10 -0.7
224,753 + MPMX19_04820 0.40 -0.9
224,753 + MPMX19_04820 0.40 +0.1
224,753 + MPMX19_04820 0.40 -0.8
224,753 + MPMX19_04820 0.40 -0.9
224,753 + MPMX19_04820 0.40 -1.3
224,754 - MPMX19_04820 0.40 -0.3
224,754 - MPMX19_04820 0.40 -1.4
224,754 - MPMX19_04820 0.40 -0.8
224,852 + MPMX19_04820 0.52 +0.4
224,852 + MPMX19_04820 0.52 +1.0
224,852 + MPMX19_04820 0.52 +1.2
224,853 - MPMX19_04820 0.52 -1.7
224,972 + MPMX19_04820 0.67 -1.0
224,972 + MPMX19_04820 0.67 +0.1
224,972 + MPMX19_04820 0.67 -0.2
224,972 + MPMX19_04820 0.67 -0.7
224,972 + MPMX19_04820 0.67 +0.6
224,972 + MPMX19_04820 0.67 +0.3
224,972 + MPMX19_04820 0.67 -0.1
224,972 + MPMX19_04820 0.67 +0.6
224,972 + MPMX19_04820 0.67 -0.1
224,972 + MPMX19_04820 0.67 +0.3
224,973 - MPMX19_04820 0.67 +0.3
224,973 - MPMX19_04820 0.67 +0.3
224,973 - MPMX19_04820 0.67 -2.0
224,973 - MPMX19_04820 0.67 +0.1
224,973 - MPMX19_04820 0.67 -0.2
224,973 - MPMX19_04820 0.67 +0.3
225,080 + MPMX19_04820 0.80 -0.4
225,081 - MPMX19_04820 0.80 +0.3

Or see this region's nucleotide sequence