Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04761

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04760 and MPMX19_04761 are separated by 48 nucleotidesMPMX19_04761 and MPMX19_04762 are separated by 43 nucleotides MPMX19_04760: MPMX19_04760 - Sialic acid TRAP transporter large permease protein SiaM, at 150,846 to 152,126 _04760 MPMX19_04761: MPMX19_04761 - hypothetical protein, at 152,175 to 152,720 _04761 MPMX19_04762: MPMX19_04762 - 4-hydroxy-tetrahydrodipicolinate synthase, at 152,764 to 153,702 _04762 Position (kb) 152 153Strain fitness (log2 ratio) -2 -1 0 1 2 3at 151.360 kb on + strand, within MPMX19_04760at 151.360 kb on + strand, within MPMX19_04760at 151.361 kb on - strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 152.024 kb on + strandat 152.024 kb on + strandat 152.024 kb on + strandat 152.024 kb on + strandat 152.024 kb on + strandat 152.025 kb on - strandat 152.025 kb on - strandat 152.025 kb on - strandat 152.025 kb on - strandat 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.734 kb on - strandat 152.734 kb on - strandat 152.867 kb on + strand, within MPMX19_04762at 152.867 kb on + strand, within MPMX19_04762at 152.867 kb on + strand, within MPMX19_04762at 152.868 kb on - strand, within MPMX19_04762at 152.868 kb on - strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.939 kb on + strand, within MPMX19_04762at 153.035 kb on + strand, within MPMX19_04762at 153.281 kb on + strand, within MPMX19_04762at 153.281 kb on + strand, within MPMX19_04762at 153.281 kb on + strand, within MPMX19_04762at 153.281 kb on + strand, within MPMX19_04762at 153.281 kb on + strand, within MPMX19_04762at 153.602 kb on + strand, within MPMX19_04762at 153.602 kb on + strand, within MPMX19_04762at 153.602 kb on + strand, within MPMX19_04762at 153.603 kb on - strand, within MPMX19_04762at 153.603 kb on - strand, within MPMX19_04762at 153.603 kb on - strand, within MPMX19_04762at 153.603 kb on - strand, within MPMX19_04762

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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151,360 + MPMX19_04760 0.40 +0.3
151,360 + MPMX19_04760 0.40 -0.7
151,361 - MPMX19_04760 0.40 -1.3
151,843 + MPMX19_04760 0.78 +0.3
151,843 + MPMX19_04760 0.78 -1.8
151,843 + MPMX19_04760 0.78 +0.0
151,843 + MPMX19_04760 0.78 +0.8
151,843 + MPMX19_04760 0.78 -1.7
151,843 + MPMX19_04760 0.78 +0.4
151,843 + MPMX19_04760 0.78 +0.1
151,843 + MPMX19_04760 0.78 -1.2
151,844 - MPMX19_04760 0.78 +0.3
151,844 - MPMX19_04760 0.78 -0.4
151,844 - MPMX19_04760 0.78 -1.3
151,844 - MPMX19_04760 0.78 -0.3
152,024 + +0.5
152,024 + -0.9
152,024 + +0.3
152,024 + +0.5
152,024 + -0.7
152,025 - -0.2
152,025 - -1.3
152,025 - +0.5
152,025 - -1.4
152,287 + MPMX19_04761 0.21 -0.4
152,287 + MPMX19_04761 0.21 -0.3
152,287 + MPMX19_04761 0.21 +0.8
152,287 + MPMX19_04761 0.21 -0.5
152,287 + MPMX19_04761 0.21 +0.4
152,288 - MPMX19_04761 0.21 +0.0
152,288 - MPMX19_04761 0.21 +1.9
152,288 - MPMX19_04761 0.21 +0.3
152,288 - MPMX19_04761 0.21 +0.9
152,288 - MPMX19_04761 0.21 -0.1
152,288 - MPMX19_04761 0.21 -0.3
152,288 - MPMX19_04761 0.21 +1.3
152,335 + MPMX19_04761 0.29 +0.1
152,335 + MPMX19_04761 0.29 -0.9
152,335 + MPMX19_04761 0.29 -0.6
152,335 + MPMX19_04761 0.29 -0.3
152,336 - MPMX19_04761 0.29 +2.3
152,336 - MPMX19_04761 0.29 +0.7
152,336 - MPMX19_04761 0.29 -1.3
152,336 - MPMX19_04761 0.29 -0.7
152,336 - MPMX19_04761 0.29 +0.0
152,431 + MPMX19_04761 0.47 +0.2
152,431 + MPMX19_04761 0.47 +0.5
152,431 + MPMX19_04761 0.47 +0.9
152,431 + MPMX19_04761 0.47 -0.0
152,432 - MPMX19_04761 0.47 -1.5
152,432 - MPMX19_04761 0.47 -0.3
152,432 - MPMX19_04761 0.47 +0.3
152,432 - MPMX19_04761 0.47 +0.3
152,698 + -0.1
152,698 + +1.1
152,698 + -0.6
152,698 + -0.2
152,698 + +0.3
152,699 - -0.3
152,699 - -0.8
152,699 - +0.3
152,699 - +0.6
152,734 - -0.4
152,734 - +1.3
152,867 + MPMX19_04762 0.11 +0.8
152,867 + MPMX19_04762 0.11 -1.3
152,867 + MPMX19_04762 0.11 -0.9
152,868 - MPMX19_04762 0.11 -0.5
152,868 - MPMX19_04762 0.11 -0.4
152,918 + MPMX19_04762 0.16 -1.6
152,918 + MPMX19_04762 0.16 -2.0
152,918 + MPMX19_04762 0.16 +0.2
152,918 + MPMX19_04762 0.16 -2.5
152,918 + MPMX19_04762 0.16 -0.4
152,918 + MPMX19_04762 0.16 +0.2
152,918 + MPMX19_04762 0.16 -2.5
152,918 + MPMX19_04762 0.16 -0.0
152,918 + MPMX19_04762 0.16 -0.3
152,918 + MPMX19_04762 0.16 -0.2
152,918 + MPMX19_04762 0.16 -0.3
152,918 + MPMX19_04762 0.16 -0.1
152,918 + MPMX19_04762 0.16 -2.3
152,918 + MPMX19_04762 0.16 +0.8
152,918 + MPMX19_04762 0.16 -0.9
152,919 - MPMX19_04762 0.17 +0.7
152,919 - MPMX19_04762 0.17 -0.1
152,919 - MPMX19_04762 0.17 -1.0
152,919 - MPMX19_04762 0.17 +0.6
152,919 - MPMX19_04762 0.17 +0.4
152,919 - MPMX19_04762 0.17 -0.0
152,919 - MPMX19_04762 0.17 -0.3
152,919 - MPMX19_04762 0.17 +0.6
152,939 + MPMX19_04762 0.19 -0.4
153,035 + MPMX19_04762 0.29 +0.8
153,281 + MPMX19_04762 0.55 +0.3
153,281 + MPMX19_04762 0.55 -1.7
153,281 + MPMX19_04762 0.55 +2.9
153,281 + MPMX19_04762 0.55 -0.5
153,281 + MPMX19_04762 0.55 -0.3
153,602 + MPMX19_04762 0.89 -1.5
153,602 + MPMX19_04762 0.89 -1.1
153,602 + MPMX19_04762 0.89 -0.0
153,603 - MPMX19_04762 0.89 +0.5
153,603 - MPMX19_04762 0.89 +0.4
153,603 - MPMX19_04762 0.89 -0.3
153,603 - MPMX19_04762 0.89 -0.7

Or see this region's nucleotide sequence