Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04240

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04238 and MPMX19_04239 are separated by 11 nucleotidesMPMX19_04239 and MPMX19_04240 overlap by 14 nucleotidesMPMX19_04240 and MPMX19_04241 overlap by 4 nucleotidesMPMX19_04241 and MPMX19_04242 are separated by 11 nucleotides MPMX19_04238: MPMX19_04238 - High-affinity branched-chain amino acid transport system permease protein LivH, at 586,721 to 587,599 _04238 MPMX19_04239: MPMX19_04239 - hypothetical protein, at 587,611 to 588,567 _04239 MPMX19_04240: MPMX19_04240 - Lipopolysaccharide export system ATP-binding protein LptB, at 588,554 to 589,279 _04240 MPMX19_04241: MPMX19_04241 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 589,276 to 589,998 _04241 MPMX19_04242: MPMX19_04242 - hypothetical protein, at 590,010 to 590,441 _04242 Position (kb) 588 589 590Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 587.650 kb on + strandat 587.650 kb on + strandat 587.650 kb on + strandat 587.650 kb on + strandat 587.650 kb on + strandat 587.651 kb on - strandat 587.651 kb on - strandat 587.651 kb on - strandat 587.651 kb on - strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.686 kb on + strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.687 kb on - strandat 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.809 kb on + strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.810 kb on - strand, within MPMX19_04239at 587.932 kb on + strand, within MPMX19_04239at 587.932 kb on + strand, within MPMX19_04239at 587.932 kb on + strand, within MPMX19_04239at 587.933 kb on - strand, within MPMX19_04239at 587.933 kb on - strand, within MPMX19_04239at 587.933 kb on - strand, within MPMX19_04239at 587.933 kb on - strand, within MPMX19_04239at 587.933 kb on - strand, within MPMX19_04239at 587.956 kb on + strand, within MPMX19_04239at 587.956 kb on + strand, within MPMX19_04239at 587.956 kb on + strand, within MPMX19_04239at 587.957 kb on - strand, within MPMX19_04239at 587.978 kb on + strand, within MPMX19_04239at 587.978 kb on + strand, within MPMX19_04239at 587.978 kb on + strand, within MPMX19_04239at 587.979 kb on - strand, within MPMX19_04239at 588.082 kb on + strand, within MPMX19_04239at 588.082 kb on + strand, within MPMX19_04239at 588.124 kb on + strand, within MPMX19_04239at 588.124 kb on + strand, within MPMX19_04239at 588.124 kb on + strand, within MPMX19_04239at 588.124 kb on + strand, within MPMX19_04239at 588.124 kb on + strand, within MPMX19_04239at 588.125 kb on - strand, within MPMX19_04239at 588.125 kb on - strand, within MPMX19_04239at 588.125 kb on - strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.311 kb on - strand, within MPMX19_04239at 588.311 kb on - strand, within MPMX19_04239at 588.311 kb on - strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.973 kb on - strandat 590.064 kb on + strand, within MPMX19_04242at 590.064 kb on + strand, within MPMX19_04242at 590.065 kb on - strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.204 kb on - strand, within MPMX19_04242

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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587,650 + +0.4
587,650 + +0.6
587,650 + -0.0
587,650 + -0.2
587,650 + -0.6
587,651 - -0.3
587,651 - +0.5
587,651 - -0.8
587,651 - -1.0
587,686 + -0.5
587,686 + +0.4
587,686 + -0.6
587,686 + -0.2
587,686 + +0.6
587,686 + -1.0
587,686 + -0.6
587,686 + -1.8
587,686 + +0.1
587,686 + +0.4
587,686 + +0.5
587,686 + -0.1
587,686 + -2.2
587,686 + +0.0
587,686 + +0.3
587,686 + -0.2
587,686 + -0.3
587,686 + +2.2
587,686 + +0.4
587,686 + -0.1
587,686 + -1.2
587,687 - -2.0
587,687 - -0.6
587,687 - -0.8
587,687 - +2.2
587,687 - -0.8
587,687 - +0.1
587,687 - +0.1
587,687 - -0.3
587,687 - -0.1
587,687 - -0.5
587,687 - -1.0
587,687 - +1.1
587,687 - +0.7
587,687 - -0.1
587,687 - +0.8
587,687 - -0.3
587,687 - +0.4
587,687 - -0.7
587,687 - -0.8
587,687 - -1.8
587,687 - +1.2
587,809 + MPMX19_04239 0.21 -0.4
587,809 + MPMX19_04239 0.21 -0.5
587,809 + MPMX19_04239 0.21 -2.0
587,809 + MPMX19_04239 0.21 -0.1
587,809 + MPMX19_04239 0.21 -0.3
587,809 + MPMX19_04239 0.21 -1.6
587,809 + MPMX19_04239 0.21 -1.2
587,809 + MPMX19_04239 0.21 -0.5
587,809 + MPMX19_04239 0.21 +0.4
587,809 + MPMX19_04239 0.21 -1.1
587,809 + MPMX19_04239 0.21 -0.0
587,810 - MPMX19_04239 0.21 +0.8
587,810 - MPMX19_04239 0.21 +0.7
587,810 - MPMX19_04239 0.21 +0.4
587,810 - MPMX19_04239 0.21 -0.8
587,810 - MPMX19_04239 0.21 -0.5
587,810 - MPMX19_04239 0.21 +1.4
587,810 - MPMX19_04239 0.21 +0.8
587,810 - MPMX19_04239 0.21 +0.2
587,810 - MPMX19_04239 0.21 -0.5
587,810 - MPMX19_04239 0.21 -0.2
587,810 - MPMX19_04239 0.21 -0.1
587,810 - MPMX19_04239 0.21 -0.2
587,810 - MPMX19_04239 0.21 +0.8
587,810 - MPMX19_04239 0.21 +1.2
587,810 - MPMX19_04239 0.21 +0.4
587,810 - MPMX19_04239 0.21 -0.2
587,810 - MPMX19_04239 0.21 +0.5
587,810 - MPMX19_04239 0.21 -0.4
587,810 - MPMX19_04239 0.21 -1.2
587,810 - MPMX19_04239 0.21 -0.3
587,810 - MPMX19_04239 0.21 -0.1
587,932 + MPMX19_04239 0.34 +0.8
587,932 + MPMX19_04239 0.34 +0.4
587,932 + MPMX19_04239 0.34 -0.4
587,933 - MPMX19_04239 0.34 -0.9
587,933 - MPMX19_04239 0.34 +0.5
587,933 - MPMX19_04239 0.34 +0.4
587,933 - MPMX19_04239 0.34 -0.6
587,933 - MPMX19_04239 0.34 +0.2
587,956 + MPMX19_04239 0.36 +0.6
587,956 + MPMX19_04239 0.36 +0.1
587,956 + MPMX19_04239 0.36 -0.7
587,957 - MPMX19_04239 0.36 -0.2
587,978 + MPMX19_04239 0.38 +0.4
587,978 + MPMX19_04239 0.38 -1.4
587,978 + MPMX19_04239 0.38 -0.5
587,979 - MPMX19_04239 0.38 -0.9
588,082 + MPMX19_04239 0.49 -0.1
588,082 + MPMX19_04239 0.49 +0.2
588,124 + MPMX19_04239 0.54 +0.1
588,124 + MPMX19_04239 0.54 -0.4
588,124 + MPMX19_04239 0.54 -0.5
588,124 + MPMX19_04239 0.54 +0.8
588,124 + MPMX19_04239 0.54 +3.2
588,125 - MPMX19_04239 0.54 +0.2
588,125 - MPMX19_04239 0.54 +0.1
588,125 - MPMX19_04239 0.54 -0.3
588,310 + MPMX19_04239 0.73 -0.6
588,310 + MPMX19_04239 0.73 -0.7
588,310 + MPMX19_04239 0.73 -0.2
588,310 + MPMX19_04239 0.73 -0.4
588,310 + MPMX19_04239 0.73 +1.5
588,310 + MPMX19_04239 0.73 -0.6
588,311 - MPMX19_04239 0.73 +0.1
588,311 - MPMX19_04239 0.73 -0.1
588,311 - MPMX19_04239 0.73 -1.4
588,409 + MPMX19_04239 0.83 +0.1
588,409 + MPMX19_04239 0.83 +0.2
588,409 + MPMX19_04239 0.83 +0.9
588,409 + MPMX19_04239 0.83 -2.1
588,409 + MPMX19_04239 0.83 -0.4
588,409 + MPMX19_04239 0.83 -0.5
588,409 + MPMX19_04239 0.83 +0.4
588,409 + MPMX19_04239 0.83 +0.8
588,409 + MPMX19_04239 0.83 -0.4
588,409 + MPMX19_04239 0.83 -0.3
588,409 + MPMX19_04239 0.83 -1.4
588,410 - MPMX19_04239 0.83 +0.4
588,410 - MPMX19_04239 0.83 +0.1
588,410 - MPMX19_04239 0.83 -1.7
588,410 - MPMX19_04239 0.83 +0.1
588,410 - MPMX19_04239 0.83 -1.1
588,410 - MPMX19_04239 0.83 +0.9
588,410 - MPMX19_04239 0.83 +0.3
588,410 - MPMX19_04239 0.83 +0.1
588,410 - MPMX19_04239 0.83 -1.8
588,410 - MPMX19_04239 0.83 -0.2
588,702 + MPMX19_04240 0.20 -2.0
588,702 + MPMX19_04240 0.20 -1.2
588,702 + MPMX19_04240 0.20 -0.3
588,702 + MPMX19_04240 0.20 -0.5
588,702 + MPMX19_04240 0.20 +0.4
588,703 - MPMX19_04240 0.21 +0.4
588,703 - MPMX19_04240 0.21 -0.2
588,703 - MPMX19_04240 0.21 -0.1
588,703 - MPMX19_04240 0.21 -2.0
589,244 + -2.1
589,244 + +1.4
589,244 + -0.6
589,244 + +0.4
589,244 + +0.4
589,244 + +1.1
589,244 + -1.9
589,244 + +0.2
589,244 + -0.7
589,244 + -0.1
589,245 - +0.2
589,245 - -0.2
589,245 - +0.0
589,245 - +0.4
589,245 - +0.0
589,245 - -0.4
589,245 - -1.6
589,245 - +0.5
589,245 - +0.2
589,245 - -0.0
589,245 - -0.3
589,897 + MPMX19_04241 0.86 -2.0
589,897 + MPMX19_04241 0.86 -0.1
589,897 + MPMX19_04241 0.86 +0.7
589,897 + MPMX19_04241 0.86 -0.3
589,897 + MPMX19_04241 0.86 -0.6
589,897 + MPMX19_04241 0.86 -0.3
589,897 + MPMX19_04241 0.86 -0.3
589,897 + MPMX19_04241 0.86 +1.2
589,897 + MPMX19_04241 0.86 +0.0
589,897 + MPMX19_04241 0.86 -0.3
589,897 + MPMX19_04241 0.86 -1.2
589,897 + MPMX19_04241 0.86 -1.4
589,898 - MPMX19_04241 0.86 -1.2
589,898 - MPMX19_04241 0.86 -0.6
589,898 - MPMX19_04241 0.86 -0.1
589,898 - MPMX19_04241 0.86 -1.4
589,898 - MPMX19_04241 0.86 +0.4
589,898 - MPMX19_04241 0.86 -0.1
589,898 - MPMX19_04241 0.86 -0.5
589,898 - MPMX19_04241 0.86 -0.2
589,898 - MPMX19_04241 0.86 +0.7
589,898 - MPMX19_04241 0.86 -2.0
589,972 + -2.0
589,972 + -1.2
589,972 + -0.1
589,972 + +0.4
589,972 + +0.1
589,972 + +0.4
589,973 - +1.7
590,064 + MPMX19_04242 0.12 -1.0
590,064 + MPMX19_04242 0.12 -0.9
590,065 - MPMX19_04242 0.13 +0.4
590,202 + MPMX19_04242 0.44 -1.8
590,202 + MPMX19_04242 0.44 -0.1
590,202 + MPMX19_04242 0.44 -1.2
590,202 + MPMX19_04242 0.44 +0.4
590,202 + MPMX19_04242 0.44 -2.2
590,202 + MPMX19_04242 0.44 -1.4
590,202 + MPMX19_04242 0.44 -0.1
590,202 + MPMX19_04242 0.44 -0.6
590,202 + MPMX19_04242 0.44 -1.0
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 +0.4
590,202 + MPMX19_04242 0.44 +0.5
590,202 + MPMX19_04242 0.44 -0.6
590,202 + MPMX19_04242 0.44 +1.6
590,202 + MPMX19_04242 0.44 -1.6
590,202 + MPMX19_04242 0.44 -1.6
590,202 + MPMX19_04242 0.44 -0.4
590,202 + MPMX19_04242 0.44 -0.8
590,202 + MPMX19_04242 0.44 +0.6
590,202 + MPMX19_04242 0.44 -0.6
590,202 + MPMX19_04242 0.44 -3.0
590,202 + MPMX19_04242 0.44 +0.4
590,202 + MPMX19_04242 0.44 +1.1
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 +0.2
590,202 + MPMX19_04242 0.44 +0.7
590,203 - MPMX19_04242 0.45 +1.2
590,203 - MPMX19_04242 0.45 -0.2
590,203 - MPMX19_04242 0.45 +0.2
590,203 - MPMX19_04242 0.45 -0.1
590,203 - MPMX19_04242 0.45 +0.1
590,203 - MPMX19_04242 0.45 +0.0
590,203 - MPMX19_04242 0.45 +0.0
590,203 - MPMX19_04242 0.45 +0.4
590,203 - MPMX19_04242 0.45 -0.1
590,203 - MPMX19_04242 0.45 +0.3
590,203 - MPMX19_04242 0.45 -0.1
590,203 - MPMX19_04242 0.45 -0.3
590,203 - MPMX19_04242 0.45 +0.8
590,203 - MPMX19_04242 0.45 -0.8
590,203 - MPMX19_04242 0.45 +0.8
590,203 - MPMX19_04242 0.45 -0.5
590,203 - MPMX19_04242 0.45 -0.8
590,203 - MPMX19_04242 0.45 -2.0
590,203 - MPMX19_04242 0.45 -0.6
590,203 - MPMX19_04242 0.45 -1.6
590,203 - MPMX19_04242 0.45 +0.6
590,204 - MPMX19_04242 0.45 -0.5

Or see this region's nucleotide sequence