Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03889

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03888 and MPMX19_03889 are separated by 57 nucleotidesMPMX19_03889 and MPMX19_03890 are separated by 27 nucleotidesMPMX19_03890 and MPMX19_03891 are separated by 3 nucleotides MPMX19_03888: MPMX19_03888 - Glutathione hydrolase-like YwrD proenzyme, at 162,437 to 164,008 _03888 MPMX19_03889: MPMX19_03889 - hypothetical protein, at 164,066 to 165,088 _03889 MPMX19_03890: MPMX19_03890 - Riboflavin transport system permease protein RibX, at 165,116 to 165,889 _03890 MPMX19_03891: MPMX19_03891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,893 to 166,747 _03891 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 163.175 kb on + strand, within MPMX19_03888at 163.176 kb on - strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.434 kb on + strand, within MPMX19_03888at 163.435 kb on - strand, within MPMX19_03888at 163.435 kb on - strand, within MPMX19_03888at 163.435 kb on - strand, within MPMX19_03888at 163.435 kb on - strand, within MPMX19_03888at 163.435 kb on - strand, within MPMX19_03888at 163.435 kb on - strand, within MPMX19_03888at 163.602 kb on + strand, within MPMX19_03888at 163.603 kb on - strand, within MPMX19_03888at 163.603 kb on - strand, within MPMX19_03888at 163.603 kb on - strand, within MPMX19_03888at 163.680 kb on + strand, within MPMX19_03888at 163.680 kb on + strand, within MPMX19_03888at 163.680 kb on + strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.681 kb on - strand, within MPMX19_03888at 163.764 kb on + strand, within MPMX19_03888at 163.942 kb on + strandat 163.943 kb on - strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.080 kb on - strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.161 kb on - strandat 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.260 kb on - strand, within MPMX19_03889at 164.310 kb on + strand, within MPMX19_03889at 164.310 kb on + strand, within MPMX19_03889at 164.311 kb on - strand, within MPMX19_03889at 164.448 kb on + strand, within MPMX19_03889at 164.448 kb on + strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.488 kb on - strand, within MPMX19_03889at 164.488 kb on - strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.862 kb on + strand, within MPMX19_03889at 164.862 kb on + strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
163,175 + MPMX19_03888 0.47 -0.7
163,176 - MPMX19_03888 0.47 -0.7
163,434 + MPMX19_03888 0.63 +0.6
163,434 + MPMX19_03888 0.63 -0.4
163,434 + MPMX19_03888 0.63 -0.2
163,434 + MPMX19_03888 0.63 -0.2
163,434 + MPMX19_03888 0.63 -0.7
163,434 + MPMX19_03888 0.63 -0.0
163,434 + MPMX19_03888 0.63 +0.3
163,434 + MPMX19_03888 0.63 -2.0
163,434 + MPMX19_03888 0.63 -0.4
163,435 - MPMX19_03888 0.63 +0.0
163,435 - MPMX19_03888 0.63 +0.3
163,435 - MPMX19_03888 0.63 +0.0
163,435 - MPMX19_03888 0.63 -0.8
163,435 - MPMX19_03888 0.63 +0.3
163,435 - MPMX19_03888 0.63 -1.8
163,602 + MPMX19_03888 0.74 +1.1
163,603 - MPMX19_03888 0.74 -1.2
163,603 - MPMX19_03888 0.74 -0.7
163,603 - MPMX19_03888 0.74 +0.3
163,680 + MPMX19_03888 0.79 +0.8
163,680 + MPMX19_03888 0.79 +0.0
163,680 + MPMX19_03888 0.79 -0.9
163,681 - MPMX19_03888 0.79 -1.2
163,681 - MPMX19_03888 0.79 -2.0
163,681 - MPMX19_03888 0.79 -0.7
163,681 - MPMX19_03888 0.79 +0.0
163,681 - MPMX19_03888 0.79 -0.8
163,681 - MPMX19_03888 0.79 +1.2
163,681 - MPMX19_03888 0.79 -1.1
163,764 + MPMX19_03888 0.84 -0.2
163,942 + -1.7
163,943 - +0.9
164,079 + +0.3
164,079 + -0.1
164,079 + -1.2
164,079 + -0.1
164,079 + -0.4
164,079 + -2.5
164,079 + -0.5
164,079 + -1.0
164,079 + +0.0
164,079 + -0.7
164,079 + +0.5
164,079 + +0.3
164,079 + -0.7
164,079 + -1.0
164,079 + +0.0
164,080 - -0.7
164,080 - -0.7
164,080 - -0.3
164,080 - +0.0
164,080 - +0.3
164,080 - -0.2
164,080 - -1.7
164,080 - +1.7
164,080 - +0.0
164,160 + +0.7
164,160 + -0.7
164,160 + +0.3
164,160 + +0.6
164,161 - +0.7
164,259 + MPMX19_03889 0.19 +1.3
164,259 + MPMX19_03889 0.19 +0.3
164,259 + MPMX19_03889 0.19 +0.3
164,259 + MPMX19_03889 0.19 -1.1
164,259 + MPMX19_03889 0.19 -1.5
164,260 - MPMX19_03889 0.19 -0.7
164,310 + MPMX19_03889 0.24 +0.3
164,310 + MPMX19_03889 0.24 +0.3
164,311 - MPMX19_03889 0.24 +0.0
164,448 + MPMX19_03889 0.37 +0.6
164,448 + MPMX19_03889 0.37 +0.2
164,449 - MPMX19_03889 0.37 -1.5
164,449 - MPMX19_03889 0.37 -0.1
164,449 - MPMX19_03889 0.37 -0.7
164,449 - MPMX19_03889 0.37 -1.2
164,449 - MPMX19_03889 0.37 -0.7
164,449 - MPMX19_03889 0.37 -2.2
164,487 + MPMX19_03889 0.41 -2.2
164,487 + MPMX19_03889 0.41 -0.2
164,487 + MPMX19_03889 0.41 +0.3
164,487 + MPMX19_03889 0.41 +0.9
164,487 + MPMX19_03889 0.41 -2.2
164,488 - MPMX19_03889 0.41 +0.9
164,488 - MPMX19_03889 0.41 +1.2
164,784 + MPMX19_03889 0.70 +0.3
164,784 + MPMX19_03889 0.70 +0.1
164,784 + MPMX19_03889 0.70 +0.1
164,784 + MPMX19_03889 0.70 +0.1
164,784 + MPMX19_03889 0.70 -0.7
164,784 + MPMX19_03889 0.70 -0.9
164,785 - MPMX19_03889 0.70 -2.2
164,785 - MPMX19_03889 0.70 -0.2
164,785 - MPMX19_03889 0.70 +2.7
164,785 - MPMX19_03889 0.70 +0.8
164,785 - MPMX19_03889 0.70 +0.9
164,862 + MPMX19_03889 0.78 +2.7
164,862 + MPMX19_03889 0.78 +0.1
164,863 - MPMX19_03889 0.78 -0.1
164,863 - MPMX19_03889 0.78 +0.3
164,863 - MPMX19_03889 0.78 -0.3
164,863 - MPMX19_03889 0.78 -0.5
164,946 + MPMX19_03889 0.86 +0.5
164,946 + MPMX19_03889 0.86 +0.0
164,946 + MPMX19_03889 0.86 -0.7
164,947 - MPMX19_03889 0.86 +0.3
164,947 - MPMX19_03889 0.86 +0.8
164,947 - MPMX19_03889 0.86 -0.4
165,189 + +1.3
165,189 + -0.2
165,189 + +0.4
165,189 + +1.0
165,189 + +0.4
165,189 + -1.2
165,189 + -0.1
165,189 + -0.1
165,189 + +0.0
165,189 + -1.2
165,190 - -1.2
165,190 - -1.5
165,190 - -1.2
165,190 - -1.2
165,190 - +0.9
165,190 - +0.5
165,190 - +0.9
165,612 + MPMX19_03890 0.64 -0.7
165,612 + MPMX19_03890 0.64 +0.3
165,612 + MPMX19_03890 0.64 +0.6
165,613 - MPMX19_03890 0.64 +1.3
165,613 - MPMX19_03890 0.64 -1.2
165,613 - MPMX19_03890 0.64 -1.0
165,613 - MPMX19_03890 0.64 -0.7
165,624 + MPMX19_03890 0.66 -0.5
165,624 + MPMX19_03890 0.66 +0.0
165,624 + MPMX19_03890 0.66 -0.7
165,625 - MPMX19_03890 0.66 -0.9
165,625 - MPMX19_03890 0.66 -0.0
165,625 - MPMX19_03890 0.66 +0.6
165,882 + +0.5
165,882 + -0.2
165,882 + -0.1
165,882 + -0.3
165,883 - -0.4
165,883 - -0.5
165,883 - +0.3
165,883 - -0.6
165,883 - -0.0
165,883 - -1.7
165,883 - +1.8
165,883 - +0.3
165,883 - -0.6

Or see this region's nucleotide sequence