Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03732

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03730 and MPMX19_03731 are separated by 67 nucleotidesMPMX19_03731 and MPMX19_03732 are separated by 38 nucleotidesMPMX19_03732 and MPMX19_03733 are separated by 215 nucleotidesMPMX19_03733 and MPMX19_03734 are separated by 113 nucleotides MPMX19_03730: MPMX19_03730 - hypothetical protein, at 1,175,618 to 1,177,177 _03730 MPMX19_03731: MPMX19_03731 - hypothetical protein, at 1,177,245 to 1,177,826 _03731 MPMX19_03732: MPMX19_03732 - hypothetical protein, at 1,177,865 to 1,178,299 _03732 MPMX19_03733: MPMX19_03733 - hypothetical protein, at 1,178,515 to 1,178,850 _03733 MPMX19_03734: MPMX19_03734 - RutC family protein YjgH, at 1,178,964 to 1,179,362 _03734 Position (kb) 1177 1178 1179Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1177.597 kb on + strand, within MPMX19_03731at 1177.597 kb on + strand, within MPMX19_03731at 1177.597 kb on + strand, within MPMX19_03731at 1177.597 kb on + strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.802 kb on + strandat 1177.803 kb on - strandat 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.190 kb on + strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.191 kb on - strand, within MPMX19_03732at 1178.312 kb on + strandat 1178.312 kb on + strandat 1178.313 kb on - strandat 1178.313 kb on - strandat 1178.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,176,978 + MPMX19_03730 0.87 +0.2
1,176,978 + MPMX19_03730 0.87 +0.3
1,176,978 + MPMX19_03730 0.87 +1.3
1,176,978 + MPMX19_03730 0.87 -0.4
1,176,978 + MPMX19_03730 0.87 -0.1
1,176,978 + MPMX19_03730 0.87 +0.3
1,176,978 + MPMX19_03730 0.87 +0.3
1,176,978 + MPMX19_03730 0.87 -0.7
1,176,978 + MPMX19_03730 0.87 -1.0
1,176,978 + MPMX19_03730 0.87 +0.2
1,176,978 + MPMX19_03730 0.87 -0.0
1,176,978 + MPMX19_03730 0.87 -0.7
1,176,978 + MPMX19_03730 0.87 +0.3
1,176,978 + MPMX19_03730 0.87 -0.4
1,176,978 + MPMX19_03730 0.87 -0.5
1,176,978 + MPMX19_03730 0.87 +0.3
1,176,978 + MPMX19_03730 0.87 +0.0
1,176,978 + MPMX19_03730 0.87 -1.8
1,176,979 - MPMX19_03730 0.87 +1.7
1,176,979 - MPMX19_03730 0.87 -0.7
1,176,979 - MPMX19_03730 0.87 -3.1
1,176,979 - MPMX19_03730 0.87 -0.2
1,176,979 - MPMX19_03730 0.87 -0.2
1,176,979 - MPMX19_03730 0.87 -0.6
1,176,979 - MPMX19_03730 0.87 -2.1
1,176,979 - MPMX19_03730 0.87 -0.1
1,176,979 - MPMX19_03730 0.87 -0.1
1,176,979 - MPMX19_03730 0.87 -0.4
1,176,979 - MPMX19_03730 0.87 +0.3
1,176,979 - MPMX19_03730 0.87 -0.7
1,176,979 - MPMX19_03730 0.87 -0.7
1,176,979 - MPMX19_03730 0.87 +0.6
1,176,979 - MPMX19_03730 0.87 -0.8
1,176,979 - MPMX19_03730 0.87 -0.3
1,176,979 - MPMX19_03730 0.87 -1.2
1,176,979 - MPMX19_03730 0.87 -1.7
1,176,979 - MPMX19_03730 0.87 +0.2
1,176,979 - MPMX19_03730 0.87 -0.1
1,176,979 - MPMX19_03730 0.87 -1.2
1,176,979 - MPMX19_03730 0.87 -0.7
1,176,979 - MPMX19_03730 0.87 +0.7
1,176,979 - MPMX19_03730 0.87 -0.7
1,176,979 - MPMX19_03730 0.87 -0.3
1,177,597 + MPMX19_03731 0.60 -0.8
1,177,597 + MPMX19_03731 0.60 +0.3
1,177,597 + MPMX19_03731 0.60 +0.0
1,177,597 + MPMX19_03731 0.60 -1.4
1,177,598 - MPMX19_03731 0.61 +0.7
1,177,598 - MPMX19_03731 0.61 -0.1
1,177,598 - MPMX19_03731 0.61 +1.3
1,177,598 - MPMX19_03731 0.61 -0.2
1,177,598 - MPMX19_03731 0.61 -1.0
1,177,598 - MPMX19_03731 0.61 -0.3
1,177,598 - MPMX19_03731 0.61 +0.0
1,177,598 - MPMX19_03731 0.61 -1.5
1,177,598 - MPMX19_03731 0.61 +0.3
1,177,598 - MPMX19_03731 0.61 -1.2
1,177,802 + +0.2
1,177,803 - -2.1
1,178,190 + MPMX19_03732 0.75 -2.5
1,178,190 + MPMX19_03732 0.75 -2.6
1,178,190 + MPMX19_03732 0.75 -0.1
1,178,190 + MPMX19_03732 0.75 -1.5
1,178,190 + MPMX19_03732 0.75 +0.2
1,178,190 + MPMX19_03732 0.75 -0.5
1,178,190 + MPMX19_03732 0.75 -0.0
1,178,191 - MPMX19_03732 0.75 -0.7
1,178,191 - MPMX19_03732 0.75 -1.2
1,178,191 - MPMX19_03732 0.75 -0.4
1,178,191 - MPMX19_03732 0.75 -0.1
1,178,191 - MPMX19_03732 0.75 -1.7
1,178,191 - MPMX19_03732 0.75 -0.7
1,178,191 - MPMX19_03732 0.75 -0.5
1,178,191 - MPMX19_03732 0.75 -1.2
1,178,191 - MPMX19_03732 0.75 -0.5
1,178,312 + +0.1
1,178,312 + -0.7
1,178,313 - +3.7
1,178,313 - +0.2
1,178,349 - +0.8

Or see this region's nucleotide sequence