Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03362

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03361 and MPMX19_03362 are separated by 56 nucleotidesMPMX19_03362 and MPMX19_03363 are separated by 7 nucleotides MPMX19_03361: MPMX19_03361 - hypothetical protein, at 734,143 to 735,297 _03361 MPMX19_03362: MPMX19_03362 - ABC transporter ATP-binding/permease protein YojI, at 735,354 to 737,027 _03362 MPMX19_03363: MPMX19_03363 - hypothetical protein, at 737,035 to 738,345 _03363 Position (kb) 735 736 737 738Strain fitness (log2 ratio) -2 -1 0 1 2at 734.398 kb on + strand, within MPMX19_03361at 734.399 kb on - strand, within MPMX19_03361at 734.399 kb on - strand, within MPMX19_03361at 734.406 kb on - strand, within MPMX19_03361at 734.459 kb on + strand, within MPMX19_03361at 734.459 kb on + strand, within MPMX19_03361at 734.549 kb on + strand, within MPMX19_03361at 734.549 kb on + strand, within MPMX19_03361at 734.550 kb on - strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 735.015 kb on + strand, within MPMX19_03361at 735.015 kb on + strand, within MPMX19_03361at 735.015 kb on + strand, within MPMX19_03361at 735.119 kb on + strand, within MPMX19_03361at 735.119 kb on + strand, within MPMX19_03361at 735.120 kb on - strand, within MPMX19_03361at 735.120 kb on - strand, within MPMX19_03361at 735.120 kb on - strand, within MPMX19_03361at 735.120 kb on - strand, within MPMX19_03361at 735.120 kb on - strand, within MPMX19_03361at 735.251 kb on + strandat 735.251 kb on + strandat 735.252 kb on - strandat 735.469 kb on + strandat 735.469 kb on + strandat 735.469 kb on + strandat 735.470 kb on - strandat 735.470 kb on - strandat 735.470 kb on - strandat 735.538 kb on + strand, within MPMX19_03362at 735.539 kb on - strand, within MPMX19_03362at 735.557 kb on - strand, within MPMX19_03362at 735.760 kb on + strand, within MPMX19_03362at 735.761 kb on - strand, within MPMX19_03362at 735.761 kb on - strand, within MPMX19_03362at 735.880 kb on + strand, within MPMX19_03362at 736.130 kb on - strand, within MPMX19_03362at 736.130 kb on - strand, within MPMX19_03362at 736.130 kb on - strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.168 kb on + strand, within MPMX19_03362at 736.294 kb on + strand, within MPMX19_03362at 736.294 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.298 kb on - strand, within MPMX19_03362at 736.298 kb on - strand, within MPMX19_03362at 736.298 kb on - strand, within MPMX19_03362at 736.321 kb on + strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.330 kb on + strand, within MPMX19_03362at 736.330 kb on + strand, within MPMX19_03362at 736.330 kb on + strand, within MPMX19_03362at 736.331 kb on - strand, within MPMX19_03362at 736.331 kb on - strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 737.507 kb on + strand, within MPMX19_03363at 737.507 kb on + strand, within MPMX19_03363at 737.507 kb on + strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.615 kb on + strand, within MPMX19_03363at 737.616 kb on - strand, within MPMX19_03363at 737.616 kb on - strand, within MPMX19_03363at 737.717 kb on + strand, within MPMX19_03363at 737.717 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.964 kb on - strand, within MPMX19_03363at 738.026 kb on + strand, within MPMX19_03363

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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734,398 + MPMX19_03361 0.22 -0.3
734,399 - MPMX19_03361 0.22 -1.5
734,399 - MPMX19_03361 0.22 -0.5
734,406 - MPMX19_03361 0.23 -0.4
734,459 + MPMX19_03361 0.27 +0.4
734,459 + MPMX19_03361 0.27 -0.3
734,549 + MPMX19_03361 0.35 +0.0
734,549 + MPMX19_03361 0.35 +0.7
734,550 - MPMX19_03361 0.35 +1.3
734,816 + MPMX19_03361 0.58 +0.1
734,816 + MPMX19_03361 0.58 +0.6
734,816 + MPMX19_03361 0.58 +0.3
734,816 + MPMX19_03361 0.58 +0.1
734,817 - MPMX19_03361 0.58 +0.0
734,817 - MPMX19_03361 0.58 -0.2
734,817 - MPMX19_03361 0.58 +0.3
734,817 - MPMX19_03361 0.58 -0.3
734,817 - MPMX19_03361 0.58 -0.7
735,015 + MPMX19_03361 0.75 +1.3
735,015 + MPMX19_03361 0.75 +0.3
735,015 + MPMX19_03361 0.75 -1.2
735,119 + MPMX19_03361 0.85 +1.5
735,119 + MPMX19_03361 0.85 -0.2
735,120 - MPMX19_03361 0.85 +0.3
735,120 - MPMX19_03361 0.85 +0.3
735,120 - MPMX19_03361 0.85 +1.1
735,120 - MPMX19_03361 0.85 +0.5
735,120 - MPMX19_03361 0.85 +0.3
735,251 + -0.0
735,251 + -0.0
735,252 - -0.9
735,469 + -1.3
735,469 + -0.7
735,469 + -0.4
735,470 - +0.3
735,470 - +0.7
735,470 - +0.8
735,538 + MPMX19_03362 0.11 +0.9
735,539 - MPMX19_03362 0.11 +0.3
735,557 - MPMX19_03362 0.12 -0.9
735,760 + MPMX19_03362 0.24 -0.7
735,761 - MPMX19_03362 0.24 -1.0
735,761 - MPMX19_03362 0.24 +0.1
735,880 + MPMX19_03362 0.31 +1.2
736,130 - MPMX19_03362 0.46 -2.0
736,130 - MPMX19_03362 0.46 +0.2
736,130 - MPMX19_03362 0.46 -0.7
736,159 + MPMX19_03362 0.48 +0.2
736,159 + MPMX19_03362 0.48 -0.9
736,159 + MPMX19_03362 0.48 -1.0
736,159 + MPMX19_03362 0.48 -0.7
736,159 + MPMX19_03362 0.48 -1.8
736,159 + MPMX19_03362 0.48 +0.9
736,159 + MPMX19_03362 0.48 -0.3
736,159 + MPMX19_03362 0.48 -1.0
736,159 + MPMX19_03362 0.48 -1.0
736,159 + MPMX19_03362 0.48 +0.0
736,159 + MPMX19_03362 0.48 -0.1
736,159 + MPMX19_03362 0.48 -2.0
736,160 - MPMX19_03362 0.48 -0.1
736,160 - MPMX19_03362 0.48 -0.4
736,160 - MPMX19_03362 0.48 +1.7
736,160 - MPMX19_03362 0.48 +0.1
736,160 - MPMX19_03362 0.48 -0.2
736,160 - MPMX19_03362 0.48 -1.0
736,160 - MPMX19_03362 0.48 +0.3
736,160 - MPMX19_03362 0.48 -1.4
736,160 - MPMX19_03362 0.48 +0.3
736,160 - MPMX19_03362 0.48 -1.5
736,160 - MPMX19_03362 0.48 -1.0
736,160 - MPMX19_03362 0.48 -0.2
736,160 - MPMX19_03362 0.48 +0.6
736,160 - MPMX19_03362 0.48 +0.2
736,160 - MPMX19_03362 0.48 -0.7
736,160 - MPMX19_03362 0.48 +0.6
736,160 - MPMX19_03362 0.48 +1.5
736,160 - MPMX19_03362 0.48 -0.9
736,160 - MPMX19_03362 0.48 +0.8
736,160 - MPMX19_03362 0.48 -0.2
736,168 + MPMX19_03362 0.49 -0.8
736,294 + MPMX19_03362 0.56 -0.9
736,294 + MPMX19_03362 0.56 -0.9
736,297 + MPMX19_03362 0.56 -1.0
736,297 + MPMX19_03362 0.56 -0.3
736,297 + MPMX19_03362 0.56 -0.7
736,297 + MPMX19_03362 0.56 -0.5
736,297 + MPMX19_03362 0.56 +0.3
736,298 - MPMX19_03362 0.56 -0.5
736,298 - MPMX19_03362 0.56 +0.2
736,298 - MPMX19_03362 0.56 -0.3
736,321 + MPMX19_03362 0.58 -1.3
736,322 - MPMX19_03362 0.58 +0.2
736,322 - MPMX19_03362 0.58 +0.5
736,322 - MPMX19_03362 0.58 -0.7
736,322 - MPMX19_03362 0.58 -0.2
736,322 - MPMX19_03362 0.58 +0.1
736,322 - MPMX19_03362 0.58 -0.9
736,330 + MPMX19_03362 0.58 -0.4
736,330 + MPMX19_03362 0.58 +0.5
736,330 + MPMX19_03362 0.58 +0.3
736,331 - MPMX19_03362 0.58 -0.7
736,331 - MPMX19_03362 0.58 -0.7
736,600 + MPMX19_03362 0.74 -0.7
736,600 + MPMX19_03362 0.74 -0.3
736,600 + MPMX19_03362 0.74 +0.6
736,600 + MPMX19_03362 0.74 -0.2
736,600 + MPMX19_03362 0.74 -0.4
736,600 + MPMX19_03362 0.74 -0.3
736,600 + MPMX19_03362 0.74 -0.7
736,601 - MPMX19_03362 0.74 -1.3
736,601 - MPMX19_03362 0.74 -0.1
736,601 - MPMX19_03362 0.74 -0.7
736,601 - MPMX19_03362 0.74 +1.3
736,601 - MPMX19_03362 0.74 +0.0
736,601 - MPMX19_03362 0.74 +0.3
737,507 + MPMX19_03363 0.36 +0.1
737,507 + MPMX19_03363 0.36 -0.5
737,507 + MPMX19_03363 0.36 +0.0
737,508 - MPMX19_03363 0.36 -1.7
737,508 - MPMX19_03363 0.36 +0.1
737,508 - MPMX19_03363 0.36 -0.7
737,508 - MPMX19_03363 0.36 -1.3
737,508 - MPMX19_03363 0.36 -1.0
737,508 - MPMX19_03363 0.36 -0.8
737,615 + MPMX19_03363 0.44 -0.7
737,616 - MPMX19_03363 0.44 +0.1
737,616 - MPMX19_03363 0.44 -0.8
737,717 + MPMX19_03363 0.52 -0.1
737,717 + MPMX19_03363 0.52 +0.3
737,777 + MPMX19_03363 0.57 -1.0
737,777 + MPMX19_03363 0.57 -1.7
737,777 + MPMX19_03363 0.57 -0.2
737,777 + MPMX19_03363 0.57 -2.4
737,777 + MPMX19_03363 0.57 -0.2
737,778 - MPMX19_03363 0.57 -0.2
737,778 - MPMX19_03363 0.57 -1.5
737,778 - MPMX19_03363 0.57 +1.7
737,778 - MPMX19_03363 0.57 +1.3
737,778 - MPMX19_03363 0.57 +1.2
737,804 + MPMX19_03363 0.59 -0.1
737,804 + MPMX19_03363 0.59 +1.9
737,804 + MPMX19_03363 0.59 -0.2
737,804 + MPMX19_03363 0.59 -0.7
737,804 + MPMX19_03363 0.59 -0.5
737,805 - MPMX19_03363 0.59 -0.8
737,805 - MPMX19_03363 0.59 -1.3
737,805 - MPMX19_03363 0.59 -0.3
737,805 - MPMX19_03363 0.59 -0.1
737,805 - MPMX19_03363 0.59 -1.7
737,841 - MPMX19_03363 0.61 -0.5
737,841 - MPMX19_03363 0.61 +0.3
737,841 - MPMX19_03363 0.61 -0.9
737,841 - MPMX19_03363 0.61 +0.9
737,964 - MPMX19_03363 0.71 -1.3
738,026 + MPMX19_03363 0.76 +0.3

Or see this region's nucleotide sequence