Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02769

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02768 and MPMX19_02769 overlap by 4 nucleotidesMPMX19_02769 and MPMX19_02770 are separated by 19 nucleotides MPMX19_02768: MPMX19_02768 - Ribose operon repressor, at 40 to 1,014 _02768 MPMX19_02769: MPMX19_02769 - Ribokinase, at 1,011 to 1,937 _02769 MPMX19_02770: MPMX19_02770 - C4-dicarboxylic acid transporter DauA, at 1,957 to 3,696 _02770 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.130 kb on + strandat 0.131 kb on - strandat 0.131 kb on - strandat 0.131 kb on - strandat 0.265 kb on + strand, within MPMX19_02768at 0.266 kb on - strand, within MPMX19_02768at 0.673 kb on + strand, within MPMX19_02768at 0.838 kb on + strand, within MPMX19_02768at 0.839 kb on - strand, within MPMX19_02768at 0.839 kb on - strand, within MPMX19_02768at 0.839 kb on - strand, within MPMX19_02768at 0.839 kb on - strand, within MPMX19_02768at 0.839 kb on - strand, within MPMX19_02768at 1.028 kb on + strandat 1.029 kb on - strandat 1.029 kb on - strandat 1.068 kb on + strandat 1.068 kb on + strandat 1.117 kb on - strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.958 kb on + strandat 1.959 kb on - strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.306 kb on + strand, within MPMX19_02770at 2.307 kb on - strand, within MPMX19_02770at 2.342 kb on + strand, within MPMX19_02770at 2.342 kb on + strand, within MPMX19_02770at 2.342 kb on + strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
130 + -0.3
131 - -1.1
131 - -0.6
131 - +0.6
265 + MPMX19_02768 0.23 +0.4
266 - MPMX19_02768 0.23 +0.4
673 + MPMX19_02768 0.65 +1.0
838 + MPMX19_02768 0.82 -0.4
839 - MPMX19_02768 0.82 +0.0
839 - MPMX19_02768 0.82 +0.2
839 - MPMX19_02768 0.82 -1.1
839 - MPMX19_02768 0.82 +0.5
839 - MPMX19_02768 0.82 -0.1
1,028 + -0.1
1,029 - -2.2
1,029 - -1.2
1,068 + -1.0
1,068 + -0.1
1,117 - MPMX19_02769 0.11 +0.7
1,704 + MPMX19_02769 0.75 -0.7
1,704 + MPMX19_02769 0.75 -2.0
1,704 + MPMX19_02769 0.75 -1.4
1,704 + MPMX19_02769 0.75 +1.9
1,704 + MPMX19_02769 0.75 -0.4
1,705 - MPMX19_02769 0.75 -0.6
1,705 - MPMX19_02769 0.75 +0.4
1,705 - MPMX19_02769 0.75 -1.1
1,705 - MPMX19_02769 0.75 -1.2
1,705 - MPMX19_02769 0.75 +0.1
1,705 - MPMX19_02769 0.75 -0.2
1,705 - MPMX19_02769 0.75 -2.2
1,705 - MPMX19_02769 0.75 -0.6
1,958 + -1.2
1,959 - +0.6
2,051 + +1.4
2,051 + +0.2
2,051 + +1.1
2,051 + +0.8
2,051 + -2.2
2,051 + +1.5
2,051 + -0.1
2,051 + -0.5
2,051 + +0.4
2,051 + +0.1
2,051 + -0.5
2,051 + -1.3
2,052 - -0.4
2,052 - -0.6
2,052 - -1.0
2,306 + MPMX19_02770 0.20 -2.4
2,307 - MPMX19_02770 0.20 -0.3
2,342 + MPMX19_02770 0.22 -0.2
2,342 + MPMX19_02770 0.22 +0.2
2,342 + MPMX19_02770 0.22 -0.3
2,343 - MPMX19_02770 0.22 +0.2
2,343 - MPMX19_02770 0.22 +0.2
2,343 - MPMX19_02770 0.22 -2.4
2,343 - MPMX19_02770 0.22 -1.6
2,343 - MPMX19_02770 0.22 +0.7
2,343 - MPMX19_02770 0.22 +0.1
2,686 + MPMX19_02770 0.42 +0.1
2,686 + MPMX19_02770 0.42 +0.0
2,686 + MPMX19_02770 0.42 -0.2
2,686 + MPMX19_02770 0.42 +0.4
2,686 + MPMX19_02770 0.42 +0.6
2,687 - MPMX19_02770 0.42 -0.1
2,687 - MPMX19_02770 0.42 -0.6
2,687 - MPMX19_02770 0.42 -0.2
2,687 - MPMX19_02770 0.42 +0.7
2,687 - MPMX19_02770 0.42 +0.4

Or see this region's nucleotide sequence