Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01307

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01305 and MPMX19_01306 are separated by 124 nucleotidesMPMX19_01306 and MPMX19_01307 are separated by 45 nucleotidesMPMX19_01307 and MPMX19_01308 are separated by 66 nucleotidesMPMX19_01308 and MPMX19_01309 are separated by 279 nucleotides MPMX19_01305: MPMX19_01305 - Phosphoribosylglycinamide formyltransferase, at 1,362,446 to 1,363,111 _01305 MPMX19_01306: MPMX19_01306 - hypothetical protein, at 1,363,236 to 1,363,379 _01306 MPMX19_01307: MPMX19_01307 - Valine--tRNA ligase, at 1,363,425 to 1,366,073 _01307 MPMX19_01308: MPMX19_01308 - hypothetical protein, at 1,366,140 to 1,366,673 _01308 MPMX19_01309: MPMX19_01309 - Outer membrane efflux protein BepC, at 1,366,953 to 1,368,356 _01309 Position (kb) 1363 1364 1365 1366 1367Strain fitness (log2 ratio) -2 -1 0 1at 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.434 kb on - strandat 1362.869 kb on + strand, within MPMX19_01305at 1362.869 kb on + strand, within MPMX19_01305at 1362.870 kb on - strand, within MPMX19_01305at 1362.870 kb on - strand, within MPMX19_01305at 1362.873 kb on + strand, within MPMX19_01305at 1362.874 kb on - strand, within MPMX19_01305at 1363.109 kb on + strandat 1363.110 kb on - strandat 1363.110 kb on - strandat 1363.110 kb on - strandat 1363.377 kb on + strandat 1363.377 kb on + strandat 1363.377 kb on + strandat 1363.378 kb on - strandat 1363.378 kb on - strandat 1366.091 kb on - strandat 1366.102 kb on - strandat 1366.102 kb on - strandat 1366.102 kb on - strandat 1366.892 kb on - strandat 1366.917 kb on - strandat 1366.917 kb on - strandat 1366.917 kb on - strandat 1366.920 kb on - strandat 1366.920 kb on - strandat 1366.920 kb on - strandat 1366.920 kb on - strandat 1366.999 kb on + strandat 1367.000 kb on - strandat 1367.018 kb on - strandat 1367.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,362,433 + -0.4
1,362,433 + -0.6
1,362,433 + -0.2
1,362,433 + -2.3
1,362,433 + -1.1
1,362,434 - +0.8
1,362,869 + MPMX19_01305 0.64 -2.1
1,362,869 + MPMX19_01305 0.64 -0.3
1,362,870 - MPMX19_01305 0.64 +0.3
1,362,870 - MPMX19_01305 0.64 -0.1
1,362,873 + MPMX19_01305 0.64 +0.8
1,362,874 - MPMX19_01305 0.64 -0.7
1,363,109 + -0.9
1,363,110 - -2.1
1,363,110 - -0.5
1,363,110 - -0.2
1,363,377 + +0.3
1,363,377 + +0.8
1,363,377 + -1.1
1,363,378 - +0.3
1,363,378 - -1.7
1,366,091 - +0.3
1,366,102 - -0.2
1,366,102 - -0.7
1,366,102 - -0.5
1,366,892 - +0.2
1,366,917 - +0.5
1,366,917 - +0.6
1,366,917 - -0.3
1,366,920 - +0.8
1,366,920 - -0.3
1,366,920 - -1.3
1,366,920 - -0.7
1,366,999 + -1.9
1,367,000 - -1.3
1,367,018 - -0.1
1,367,018 - +0.7

Or see this region's nucleotide sequence