Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01099

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01098 and MPMX19_01099 are separated by 78 nucleotidesMPMX19_01099 and MPMX19_01100 are separated by 16 nucleotides MPMX19_01098: MPMX19_01098 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 1,133,006 to 1,134,019 _01098 MPMX19_01099: MPMX19_01099 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,134,098 to 1,135,471 _01099 MPMX19_01100: MPMX19_01100 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 1,135,488 to 1,136,810 _01100 Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -1 0 1at 1133.180 kb on + strand, within MPMX19_01098at 1134.035 kb on + strandat 1134.035 kb on + strandat 1134.035 kb on + strandat 1135.435 kb on + strandat 1135.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,133,180 + MPMX19_01098 0.17 -1.7
1,134,035 + +0.0
1,134,035 + -0.7
1,134,035 + -0.1
1,135,435 + -0.7
1,135,463 + -1.3

Or see this region's nucleotide sequence