Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16575

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07045 and A4249_RS07050 are separated by 75 nucleotidesA4249_RS07050 and A4249_RS07055 overlap by 4 nucleotidesA4249_RS07055 and A4249_RS16570 are separated by 2 nucleotidesA4249_RS16570 and A4249_RS16575 overlap by 4 nucleotidesA4249_RS16575 and A4249_RS07060 are separated by 81 nucleotidesA4249_RS07060 and A4249_RS16780 overlap by 1 nucleotidesA4249_RS16780 and A4249_RS07070 overlap by 4 nucleotides A4249_RS07045: A4249_RS07045 - hypothetical protein, at 1,417,860 to 1,418,255 _RS07045 A4249_RS07050: A4249_RS07050 - hypothetical protein, at 1,418,331 to 1,418,708 _RS07050 A4249_RS07055: A4249_RS07055 - hypothetical protein, at 1,418,705 to 1,418,932 _RS07055 A4249_RS16570: A4249_RS16570 - hypothetical protein, at 1,418,935 to 1,419,240 _RS16570 A4249_RS16575: A4249_RS16575 - hypothetical protein, at 1,419,237 to 1,419,383 _RS16575 A4249_RS07060: A4249_RS07060 - single-stranded DNA-binding protein, at 1,419,465 to 1,419,917 _RS07060 A4249_RS16780: A4249_RS16780 - HNH endonuclease, at 1,419,917 to 1,420,318 _RS16780 A4249_RS07070: A4249_RS07070 - hypothetical protein, at 1,420,315 to 1,420,665 _RS07070 Position (kb) 1419 1420Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1418.327 kb on - strandat 1418.404 kb on - strand, within A4249_RS07050at 1418.434 kb on - strand, within A4249_RS07050at 1418.434 kb on - strand, within A4249_RS07050at 1418.434 kb on - strand, within A4249_RS07050at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.000 kb on - strand, within A4249_RS16570at 1419.104 kb on - strand, within A4249_RS16570at 1419.104 kb on - strand, within A4249_RS16570at 1419.104 kb on - strand, within A4249_RS16570at 1419.104 kb on - strand, within A4249_RS16570at 1419.104 kb on - strand, within A4249_RS16570at 1419.104 kb on - strand, within A4249_RS16570at 1419.839 kb on + strand, within A4249_RS07060at 1419.839 kb on + strand, within A4249_RS07060at 1419.850 kb on - strand, within A4249_RS07060at 1419.868 kb on - strand, within A4249_RS07060at 1419.888 kb on + strandat 1419.977 kb on + strand, within A4249_RS16780at 1419.977 kb on + strand, within A4249_RS16780at 1419.977 kb on + strand, within A4249_RS16780at 1419.978 kb on - strand, within A4249_RS16780at 1419.978 kb on - strand, within A4249_RS16780at 1420.052 kb on + strand, within A4249_RS16780at 1420.053 kb on - strand, within A4249_RS16780at 1420.067 kb on + strand, within A4249_RS16780at 1420.067 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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1,418,327 - +0.2
1,418,404 - A4249_RS07050 0.19 +0.2
1,418,434 - A4249_RS07050 0.27 +0.2
1,418,434 - A4249_RS07050 0.27 +1.0
1,418,434 - A4249_RS07050 0.27 +0.2
1,419,000 - A4249_RS16570 0.21 +0.0
1,419,000 - A4249_RS16570 0.21 +0.2
1,419,000 - A4249_RS16570 0.21 +0.2
1,419,000 - A4249_RS16570 0.21 -1.4
1,419,000 - A4249_RS16570 0.21 -1.4
1,419,000 - A4249_RS16570 0.21 -2.4
1,419,000 - A4249_RS16570 0.21 -0.2
1,419,000 - A4249_RS16570 0.21 -1.8
1,419,000 - A4249_RS16570 0.21 +0.8
1,419,000 - A4249_RS16570 0.21 -0.8
1,419,000 - A4249_RS16570 0.21 +0.2
1,419,104 - A4249_RS16570 0.55 -1.9
1,419,104 - A4249_RS16570 0.55 -0.5
1,419,104 - A4249_RS16570 0.55 +1.1
1,419,104 - A4249_RS16570 0.55 -1.4
1,419,104 - A4249_RS16570 0.55 -0.2
1,419,104 - A4249_RS16570 0.55 +0.1
1,419,839 + A4249_RS07060 0.83 -2.1
1,419,839 + A4249_RS07060 0.83 +0.2
1,419,850 - A4249_RS07060 0.85 +1.8
1,419,868 - A4249_RS07060 0.89 +0.4
1,419,888 + -1.0
1,419,977 + A4249_RS16780 0.15 +0.9
1,419,977 + A4249_RS16780 0.15 +0.3
1,419,977 + A4249_RS16780 0.15 +1.5
1,419,978 - A4249_RS16780 0.15 -2.4
1,419,978 - A4249_RS16780 0.15 +0.8
1,420,052 + A4249_RS16780 0.34 -0.1
1,420,053 - A4249_RS16780 0.34 -0.8
1,420,067 + A4249_RS16780 0.37 +0.8
1,420,067 + A4249_RS16780 0.37 +0.2
1,420,127 + A4249_RS16780 0.52 +2.8
1,420,127 + A4249_RS16780 0.52 -0.6
1,420,127 + A4249_RS16780 0.52 +2.2
1,420,127 + A4249_RS16780 0.52 -1.8
1,420,127 + A4249_RS16780 0.52 -0.4
1,420,127 + A4249_RS16780 0.52 -1.8
1,420,127 + A4249_RS16780 0.52 +0.0
1,420,128 - A4249_RS16780 0.52 +1.4
1,420,128 - A4249_RS16780 0.52 +0.4
1,420,128 - A4249_RS16780 0.52 -2.6
1,420,128 - A4249_RS16780 0.52 +1.2
1,420,128 - A4249_RS16780 0.52 -2.9

Or see this region's nucleotide sequence