Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15860

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15850 and A4249_RS15855 are separated by 46 nucleotidesA4249_RS15855 and A4249_RS15860 overlap by 4 nucleotidesA4249_RS15860 and A4249_RS15865 are separated by 13 nucleotides A4249_RS15850: A4249_RS15850 - MgtC/SapB family protein, at 3,201,751 to 3,202,446 _RS15850 A4249_RS15855: A4249_RS15855 - crossover junction endodeoxyribonuclease RuvC, at 3,202,493 to 3,203,011 _RS15855 A4249_RS15860: A4249_RS15860 - Holliday junction branch migration protein RuvA, at 3,203,008 to 3,203,625 _RS15860 A4249_RS15865: A4249_RS15865 - Holliday junction branch migration DNA helicase RuvB, at 3,203,639 to 3,204,670 _RS15865 Position (kb) 3203 3204Strain fitness (log2 ratio) -2 -1 0 1at 3202.117 kb on + strand, within A4249_RS15850at 3202.117 kb on + strand, within A4249_RS15850at 3202.118 kb on - strand, within A4249_RS15850at 3202.373 kb on + strand, within A4249_RS15850at 3202.374 kb on - strand, within A4249_RS15850at 3202.374 kb on - strand, within A4249_RS15850at 3202.374 kb on - strand, within A4249_RS15850at 3202.420 kb on + strandat 3202.420 kb on + strandat 3202.420 kb on + strandat 3202.420 kb on + strandat 3202.421 kb on - strandat 3203.084 kb on - strand, within A4249_RS15860at 3204.130 kb on + strand, within A4249_RS15865at 3204.177 kb on - strand, within A4249_RS15865at 3204.177 kb on - strand, within A4249_RS15865at 3204.452 kb on + strand, within A4249_RS15865at 3204.452 kb on + strand, within A4249_RS15865at 3204.453 kb on - strand, within A4249_RS15865at 3204.600 kb on - strandat 3204.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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3,202,117 + A4249_RS15850 0.53 -0.1
3,202,117 + A4249_RS15850 0.53 -0.7
3,202,118 - A4249_RS15850 0.53 -0.1
3,202,373 + A4249_RS15850 0.89 -0.2
3,202,374 - A4249_RS15850 0.90 +1.4
3,202,374 - A4249_RS15850 0.90 +0.4
3,202,374 - A4249_RS15850 0.90 +0.1
3,202,420 + +0.7
3,202,420 + +0.8
3,202,420 + +0.4
3,202,420 + -0.6
3,202,421 - +0.2
3,203,084 - A4249_RS15860 0.12 +0.4
3,204,130 + A4249_RS15865 0.48 -2.6
3,204,177 - A4249_RS15865 0.52 -0.6
3,204,177 - A4249_RS15865 0.52 +0.4
3,204,452 + A4249_RS15865 0.79 +0.4
3,204,452 + A4249_RS15865 0.79 +0.4
3,204,453 - A4249_RS15865 0.79 -1.9
3,204,600 - -2.6
3,204,600 - -0.6

Or see this region's nucleotide sequence