Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15565

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15550 and A4249_RS15555 overlap by 1 nucleotidesA4249_RS15555 and A4249_RS15560 overlap by 4 nucleotidesA4249_RS15560 and A4249_RS15565 are separated by 29 nucleotidesA4249_RS15565 and A4249_RS15570 are separated by 3 nucleotidesA4249_RS15570 and A4249_RS15575 overlap by 4 nucleotides A4249_RS15550: A4249_RS15550 - methyl-accepting chemotaxis protein, at 3,148,325 to 3,150,256 _RS15550 A4249_RS15555: A4249_RS15555 - STAS domain-containing protein, at 3,150,256 to 3,150,531 _RS15555 A4249_RS15560: A4249_RS15560 - response regulator, at 3,150,528 to 3,150,893 _RS15560 A4249_RS15565: A4249_RS15565 - chemotaxis protein CheA, at 3,150,923 to 3,153,172 _RS15565 A4249_RS15570: A4249_RS15570 - chemotaxis protein CheW, at 3,153,176 to 3,153,631 _RS15570 A4249_RS15575: A4249_RS15575 - protein-glutamate O-methyltransferase, at 3,153,628 to 3,154,488 _RS15575 Position (kb) 3150 3151 3152 3153 3154Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.443 kb on + strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.444 kb on - strand, within A4249_RS15555at 3150.607 kb on - strand, within A4249_RS15560at 3150.607 kb on - strand, within A4249_RS15560at 3150.921 kb on + strandat 3150.921 kb on + strandat 3150.921 kb on + strandat 3150.922 kb on - strandat 3150.922 kb on - strandat 3151.223 kb on - strand, within A4249_RS15565at 3151.223 kb on - strand, within A4249_RS15565at 3151.223 kb on - strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.475 kb on + strand, within A4249_RS15565at 3151.476 kb on - strand, within A4249_RS15565at 3151.476 kb on - strand, within A4249_RS15565at 3151.476 kb on - strand, within A4249_RS15565at 3151.476 kb on - strand, within A4249_RS15565at 3151.476 kb on - strand, within A4249_RS15565at 3151.896 kb on + strand, within A4249_RS15565at 3151.896 kb on + strand, within A4249_RS15565at 3152.198 kb on - strand, within A4249_RS15565at 3152.198 kb on - strand, within A4249_RS15565at 3152.198 kb on - strand, within A4249_RS15565at 3152.198 kb on - strand, within A4249_RS15565at 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.038 kb on + strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.039 kb on - strandat 3153.311 kb on + strand, within A4249_RS15570at 3153.311 kb on + strand, within A4249_RS15570at 3153.312 kb on - strand, within A4249_RS15570at 3153.363 kb on + strand, within A4249_RS15570at 3153.363 kb on + strand, within A4249_RS15570at 3153.363 kb on + strand, within A4249_RS15570at 3153.364 kb on - strand, within A4249_RS15570at 3153.364 kb on - strand, within A4249_RS15570at 3153.596 kb on + strandat 3153.596 kb on + strandat 3153.596 kb on + strandat 3153.596 kb on + strandat 3153.596 kb on + strandat 3153.596 kb on + strandat 3153.597 kb on - strandat 3153.597 kb on - strandat 3153.597 kb on - strandat 3153.597 kb on - strandat 3153.597 kb on - strandat 3153.597 kb on - strandat 3153.597 kb on - strandat 3153.763 kb on + strand, within A4249_RS15575at 3153.763 kb on + strand, within A4249_RS15575at 3153.764 kb on - strand, within A4249_RS15575at 3153.818 kb on - strand, within A4249_RS15575at 3153.818 kb on - strand, within A4249_RS15575at 3154.083 kb on + strand, within A4249_RS15575at 3154.083 kb on + strand, within A4249_RS15575at 3154.084 kb on - strand, within A4249_RS15575at 3154.084 kb on - strand, within A4249_RS15575at 3154.084 kb on - strand, within A4249_RS15575at 3154.084 kb on - strand, within A4249_RS15575at 3154.138 kb on + strand, within A4249_RS15575at 3154.139 kb on - strand, within A4249_RS15575

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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3,150,443 + A4249_RS15555 0.68 -0.6
3,150,443 + A4249_RS15555 0.68 -0.8
3,150,443 + A4249_RS15555 0.68 +2.0
3,150,443 + A4249_RS15555 0.68 +0.7
3,150,443 + A4249_RS15555 0.68 -0.1
3,150,443 + A4249_RS15555 0.68 +0.9
3,150,443 + A4249_RS15555 0.68 -0.2
3,150,443 + A4249_RS15555 0.68 +0.7
3,150,444 - A4249_RS15555 0.68 +0.1
3,150,444 - A4249_RS15555 0.68 +0.1
3,150,444 - A4249_RS15555 0.68 -0.9
3,150,444 - A4249_RS15555 0.68 +0.6
3,150,444 - A4249_RS15555 0.68 +0.1
3,150,444 - A4249_RS15555 0.68 -0.2
3,150,444 - A4249_RS15555 0.68 +0.4
3,150,444 - A4249_RS15555 0.68 +1.2
3,150,444 - A4249_RS15555 0.68 -0.0
3,150,607 - A4249_RS15560 0.22 -0.1
3,150,607 - A4249_RS15560 0.22 +0.4
3,150,921 + +0.1
3,150,921 + +1.0
3,150,921 + +0.1
3,150,922 - +0.1
3,150,922 - +0.9
3,151,223 - A4249_RS15565 0.13 +0.0
3,151,223 - A4249_RS15565 0.13 -0.2
3,151,223 - A4249_RS15565 0.13 -0.1
3,151,475 + A4249_RS15565 0.25 +1.0
3,151,475 + A4249_RS15565 0.25 +0.2
3,151,475 + A4249_RS15565 0.25 +0.1
3,151,475 + A4249_RS15565 0.25 +0.6
3,151,475 + A4249_RS15565 0.25 +0.6
3,151,475 + A4249_RS15565 0.25 -0.7
3,151,475 + A4249_RS15565 0.25 +1.6
3,151,476 - A4249_RS15565 0.25 -1.0
3,151,476 - A4249_RS15565 0.25 -2.4
3,151,476 - A4249_RS15565 0.25 +0.3
3,151,476 - A4249_RS15565 0.25 +3.2
3,151,476 - A4249_RS15565 0.25 -0.6
3,151,896 + A4249_RS15565 0.43 +0.3
3,151,896 + A4249_RS15565 0.43 +0.0
3,152,198 - A4249_RS15565 0.57 -0.2
3,152,198 - A4249_RS15565 0.57 -1.0
3,152,198 - A4249_RS15565 0.57 +0.3
3,152,198 - A4249_RS15565 0.57 +0.1
3,153,038 + +0.4
3,153,038 + -1.2
3,153,038 + -0.6
3,153,038 + -0.1
3,153,038 + +0.3
3,153,038 + -0.5
3,153,038 + +0.2
3,153,038 + -0.2
3,153,039 - +0.5
3,153,039 - +0.2
3,153,039 - +0.4
3,153,039 - -0.2
3,153,039 - +0.3
3,153,039 - +0.1
3,153,039 - -0.0
3,153,039 - -1.2
3,153,039 - +1.0
3,153,039 - -0.2
3,153,311 + A4249_RS15570 0.30 -0.6
3,153,311 + A4249_RS15570 0.30 +0.2
3,153,312 - A4249_RS15570 0.30 -2.2
3,153,363 + A4249_RS15570 0.41 -1.0
3,153,363 + A4249_RS15570 0.41 -0.6
3,153,363 + A4249_RS15570 0.41 +0.1
3,153,364 - A4249_RS15570 0.41 -0.3
3,153,364 - A4249_RS15570 0.41 -1.3
3,153,596 + +1.3
3,153,596 + +0.1
3,153,596 + -0.3
3,153,596 + -0.0
3,153,596 + -0.3
3,153,596 + +0.4
3,153,597 - -0.6
3,153,597 - -0.9
3,153,597 - -0.8
3,153,597 - +0.8
3,153,597 - -0.1
3,153,597 - -0.6
3,153,597 - +0.6
3,153,763 + A4249_RS15575 0.16 -0.3
3,153,763 + A4249_RS15575 0.16 -1.0
3,153,764 - A4249_RS15575 0.16 -0.8
3,153,818 - A4249_RS15575 0.22 +0.7
3,153,818 - A4249_RS15575 0.22 -0.6
3,154,083 + A4249_RS15575 0.53 +0.8
3,154,083 + A4249_RS15575 0.53 -0.3
3,154,084 - A4249_RS15575 0.53 +1.3
3,154,084 - A4249_RS15575 0.53 +0.4
3,154,084 - A4249_RS15575 0.53 -1.9
3,154,084 - A4249_RS15575 0.53 -0.8
3,154,138 + A4249_RS15575 0.59 +0.4
3,154,139 - A4249_RS15575 0.59 -0.1

Or see this region's nucleotide sequence