Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14620

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14610 and A4249_RS14615 overlap by 1 nucleotidesA4249_RS14615 and A4249_RS14620 are separated by 83 nucleotidesA4249_RS14620 and A4249_RS14625 are separated by 199 nucleotidesA4249_RS14625 and A4249_RS14630 overlap by 4 nucleotides A4249_RS14610: A4249_RS14610 - glycosyltransferase family 39 protein, at 2,959,644 to 2,961,332 _RS14610 A4249_RS14615: A4249_RS14615 - hydroxymethylglutaryl-CoA lyase, at 2,961,332 to 2,962,246 _RS14615 A4249_RS14620: A4249_RS14620 - hypothetical protein, at 2,962,330 to 2,962,755 _RS14620 A4249_RS14625: A4249_RS14625 - hypothetical protein, at 2,962,955 to 2,963,308 _RS14625 A4249_RS14630: A4249_RS14630 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,963,305 to 2,963,934 _RS14630 Position (kb) 2962 2963Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2961.331 kb on - strandat 2962.277 kb on + strandat 2962.277 kb on + strandat 2962.278 kb on - strandat 2962.297 kb on + strandat 2962.298 kb on - strandat 2962.372 kb on + strandat 2962.372 kb on + strandat 2962.372 kb on + strandat 2962.372 kb on + strandat 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.608 kb on - strand, within A4249_RS14620at 2962.788 kb on + strandat 2962.789 kb on - strandat 2962.810 kb on + strandat 2962.811 kb on - strandat 2963.013 kb on + strand, within A4249_RS14625at 2963.013 kb on + strand, within A4249_RS14625at 2963.013 kb on + strand, within A4249_RS14625at 2963.014 kb on - strand, within A4249_RS14625at 2963.029 kb on - strand, within A4249_RS14625at 2963.503 kb on - strand, within A4249_RS14630

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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2,961,331 - -0.1
2,962,277 + -0.3
2,962,277 + +1.0
2,962,278 - +3.0
2,962,297 + +0.1
2,962,298 - -0.1
2,962,372 + -0.5
2,962,372 + -1.5
2,962,372 + -0.5
2,962,372 + -2.4
2,962,373 - A4249_RS14620 0.10 -1.5
2,962,373 - A4249_RS14620 0.10 +0.4
2,962,373 - A4249_RS14620 0.10 +0.4
2,962,373 - A4249_RS14620 0.10 -1.7
2,962,373 - A4249_RS14620 0.10 +0.1
2,962,378 - A4249_RS14620 0.11 +1.0
2,962,378 - A4249_RS14620 0.11 +0.9
2,962,378 - A4249_RS14620 0.11 -0.9
2,962,378 - A4249_RS14620 0.11 -0.3
2,962,608 - A4249_RS14620 0.65 +1.5
2,962,788 + +0.2
2,962,789 - +0.2
2,962,810 + +0.6
2,962,811 - +0.5
2,963,013 + A4249_RS14625 0.16 -0.0
2,963,013 + A4249_RS14625 0.16 -0.5
2,963,013 + A4249_RS14625 0.16 +1.4
2,963,014 - A4249_RS14625 0.17 +0.5
2,963,029 - A4249_RS14625 0.21 +0.5
2,963,503 - A4249_RS14630 0.31 -1.3

Or see this region's nucleotide sequence