Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12855

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12850 and A4249_RS12855 are separated by 333 nucleotidesA4249_RS12855 and A4249_RS12860 are separated by 12 nucleotidesA4249_RS12860 and A4249_RS12865 are separated by 111 nucleotides A4249_RS12850: A4249_RS12850 - pitrilysin family protein, at 2,577,719 to 2,580,583 _RS12850 A4249_RS12855: A4249_RS12855 - serine protease, at 2,580,917 to 2,581,750 _RS12855 A4249_RS12860: A4249_RS12860 - DUF350 domain-containing protein, at 2,581,763 to 2,582,203 _RS12860 A4249_RS12865: A4249_RS12865 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,582,315 to 2,583,475 _RS12865 Position (kb) 2580 2581 2582Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2580.116 kb on + strand, within A4249_RS12850at 2580.116 kb on + strand, within A4249_RS12850at 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.359 kb on + strandat 2580.360 kb on - strandat 2580.360 kb on - strandat 2580.360 kb on - strandat 2580.390 kb on - strandat 2580.582 kb on - strandat 2580.648 kb on + strandat 2580.649 kb on - strandat 2580.729 kb on + strandat 2580.729 kb on + strandat 2580.729 kb on + strandat 2580.729 kb on + strandat 2580.730 kb on - strandat 2580.730 kb on - strandat 2580.730 kb on - strandat 2580.730 kb on - strandat 2580.730 kb on - strandat 2580.730 kb on - strandat 2580.984 kb on + strandat 2580.984 kb on + strandat 2580.984 kb on + strandat 2580.985 kb on - strandat 2580.985 kb on - strandat 2580.985 kb on - strandat 2581.075 kb on + strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.807 kb on + strand, within A4249_RS12860at 2582.079 kb on + strand, within A4249_RS12860at 2582.079 kb on + strand, within A4249_RS12860at 2582.080 kb on - strand, within A4249_RS12860at 2582.080 kb on - strand, within A4249_RS12860at 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.338 kb on + strandat 2582.338 kb on + strandat 2582.339 kb on - strandat 2582.436 kb on + strand, within A4249_RS12865at 2582.437 kb on - strand, within A4249_RS12865at 2582.497 kb on - strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.655 kb on + strand, within A4249_RS12865at 2582.656 kb on - strand, within A4249_RS12865at 2582.691 kb on + strand, within A4249_RS12865at 2582.691 kb on + strand, within A4249_RS12865at 2582.692 kb on - strand, within A4249_RS12865

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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2,580,116 + A4249_RS12850 0.84 -2.6
2,580,116 + A4249_RS12850 0.84 +0.4
2,580,359 + -2.7
2,580,359 + -1.2
2,580,359 + -0.4
2,580,359 + +0.4
2,580,359 + -0.3
2,580,359 + -0.0
2,580,359 + -0.0
2,580,359 + +0.5
2,580,360 - -0.9
2,580,360 - -0.3
2,580,360 - +0.6
2,580,390 - -0.9
2,580,582 - -0.6
2,580,648 + -0.3
2,580,649 - +1.3
2,580,729 + +1.2
2,580,729 + +0.9
2,580,729 + +0.0
2,580,729 + +0.4
2,580,730 - -1.1
2,580,730 - -0.8
2,580,730 - +0.4
2,580,730 - -0.1
2,580,730 - +0.1
2,580,730 - +0.1
2,580,984 + +0.4
2,580,984 + +0.3
2,580,984 + +1.4
2,580,985 - +1.4
2,580,985 - -0.6
2,580,985 - +1.4
2,581,075 + A4249_RS12855 0.19 +1.4
2,581,076 - A4249_RS12855 0.19 +2.9
2,581,076 - A4249_RS12855 0.19 +1.2
2,581,076 - A4249_RS12855 0.19 +0.5
2,581,076 - A4249_RS12855 0.19 +0.5
2,581,077 + A4249_RS12855 0.19 +1.4
2,581,077 + A4249_RS12855 0.19 +0.5
2,581,077 + A4249_RS12855 0.19 +0.8
2,581,077 + A4249_RS12855 0.19 +1.4
2,581,077 + A4249_RS12855 0.19 -0.9
2,581,077 + A4249_RS12855 0.19 +2.0
2,581,077 + A4249_RS12855 0.19 +2.2
2,581,078 - A4249_RS12855 0.19 +0.1
2,581,078 - A4249_RS12855 0.19 +0.4
2,581,078 - A4249_RS12855 0.19 -0.4
2,581,078 - A4249_RS12855 0.19 -0.4
2,581,078 - A4249_RS12855 0.19 +1.0
2,581,078 - A4249_RS12855 0.19 +0.4
2,581,078 - A4249_RS12855 0.19 +0.6
2,581,078 - A4249_RS12855 0.19 +0.4
2,581,078 - A4249_RS12855 0.19 -1.6
2,581,608 - A4249_RS12855 0.83 +0.6
2,581,608 - A4249_RS12855 0.83 +0.4
2,581,608 - A4249_RS12855 0.83 +0.4
2,581,608 - A4249_RS12855 0.83 -1.1
2,581,608 - A4249_RS12855 0.83 +0.4
2,581,608 - A4249_RS12855 0.83 +0.5
2,581,608 - A4249_RS12855 0.83 +2.0
2,581,716 + +1.3
2,581,716 + +2.6
2,581,716 + +1.2
2,581,716 + -1.1
2,581,716 + +0.9
2,581,716 + +0.4
2,581,717 - -0.8
2,581,717 - -1.7
2,581,717 - -0.1
2,581,717 - -0.6
2,581,717 - +3.2
2,581,717 - +2.1
2,581,717 - +0.9
2,581,717 - +0.5
2,581,717 - +0.8
2,581,717 - -0.0
2,581,717 - +1.3
2,581,717 - +0.1
2,581,807 + A4249_RS12860 0.10 +0.2
2,582,079 + A4249_RS12860 0.72 +0.9
2,582,079 + A4249_RS12860 0.72 +0.3
2,582,080 - A4249_RS12860 0.72 +1.0
2,582,080 - A4249_RS12860 0.72 +0.0
2,582,269 + +0.2
2,582,269 + +0.7
2,582,269 + +1.2
2,582,269 + +2.8
2,582,269 + -0.1
2,582,269 + -1.9
2,582,269 + +0.4
2,582,269 + -2.1
2,582,269 + -0.6
2,582,269 + -0.4
2,582,270 - +0.8
2,582,270 - -0.6
2,582,270 - +1.0
2,582,270 - +0.2
2,582,270 - +0.2
2,582,338 + +0.3
2,582,338 + +2.4
2,582,339 - +1.4
2,582,436 + A4249_RS12865 0.10 +0.4
2,582,437 - A4249_RS12865 0.11 +0.1
2,582,497 - A4249_RS12865 0.16 -0.8
2,582,616 + A4249_RS12865 0.26 +1.4
2,582,616 + A4249_RS12865 0.26 -0.6
2,582,616 + A4249_RS12865 0.26 +0.4
2,582,616 + A4249_RS12865 0.26 +1.8
2,582,616 + A4249_RS12865 0.26 -2.5
2,582,616 + A4249_RS12865 0.26 -0.7
2,582,616 + A4249_RS12865 0.26 +0.0
2,582,616 + A4249_RS12865 0.26 -0.1
2,582,616 + A4249_RS12865 0.26 -0.6
2,582,617 - A4249_RS12865 0.26 -0.6
2,582,617 - A4249_RS12865 0.26 -0.0
2,582,617 - A4249_RS12865 0.26 -0.0
2,582,655 + A4249_RS12865 0.29 +0.9
2,582,656 - A4249_RS12865 0.29 +0.1
2,582,691 + A4249_RS12865 0.32 +0.2
2,582,691 + A4249_RS12865 0.32 +0.0
2,582,692 - A4249_RS12865 0.32 -0.1

Or see this region's nucleotide sequence