Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12615

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12610 and A4249_RS12615 are separated by 405 nucleotidesA4249_RS12615 and A4249_RS12620 are separated by 169 nucleotides A4249_RS12610: A4249_RS12610 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 2,527,702 to 2,529,894 _RS12610 A4249_RS12615: A4249_RS12615 - recombinase RecA, at 2,530,300 to 2,531,382 _RS12615 A4249_RS12620: A4249_RS12620 - MHYT domain-containing protein, at 2,531,552 to 2,533,192 _RS12620 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2529.358 kb on + strand, within A4249_RS12610at 2529.358 kb on + strand, within A4249_RS12610at 2529.358 kb on + strand, within A4249_RS12610at 2529.359 kb on - strand, within A4249_RS12610at 2529.359 kb on - strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.400 kb on + strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.401 kb on - strand, within A4249_RS12610at 2529.481 kb on + strand, within A4249_RS12610at 2529.481 kb on + strand, within A4249_RS12610at 2529.481 kb on + strand, within A4249_RS12610at 2529.481 kb on + strand, within A4249_RS12610at 2529.482 kb on - strand, within A4249_RS12610at 2529.482 kb on - strand, within A4249_RS12610at 2529.482 kb on - strand, within A4249_RS12610at 2529.482 kb on - strand, within A4249_RS12610at 2529.482 kb on - strand, within A4249_RS12610at 2529.487 kb on + strand, within A4249_RS12610at 2529.487 kb on + strand, within A4249_RS12610at 2529.487 kb on + strand, within A4249_RS12610at 2529.488 kb on - strand, within A4249_RS12610at 2529.614 kb on - strand, within A4249_RS12610at 2529.796 kb on + strandat 2529.796 kb on + strandat 2529.796 kb on + strandat 2529.797 kb on - strandat 2529.797 kb on - strandat 2529.797 kb on - strandat 2529.797 kb on - strandat 2529.797 kb on - strandat 2529.859 kb on + strandat 2529.859 kb on + strandat 2529.859 kb on + strandat 2529.859 kb on + strandat 2530.101 kb on - strandat 2530.233 kb on + strandat 2530.469 kb on + strand, within A4249_RS12615at 2530.470 kb on - strand, within A4249_RS12615at 2530.470 kb on - strand, within A4249_RS12615at 2530.470 kb on - strand, within A4249_RS12615at 2530.557 kb on - strand, within A4249_RS12615at 2530.694 kb on + strand, within A4249_RS12615at 2530.694 kb on + strand, within A4249_RS12615at 2530.695 kb on - strand, within A4249_RS12615at 2530.695 kb on - strand, within A4249_RS12615at 2530.695 kb on - strand, within A4249_RS12615at 2530.740 kb on - strand, within A4249_RS12615at 2530.929 kb on + strand, within A4249_RS12615at 2531.040 kb on - strand, within A4249_RS12615at 2531.467 kb on - strandat 2531.531 kb on + strandat 2531.531 kb on + strandat 2531.532 kb on - strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.595 kb on + strandat 2531.596 kb on - strandat 2531.596 kb on - strandat 2531.596 kb on - strandat 2531.596 kb on - strandat 2531.781 kb on + strand, within A4249_RS12620at 2531.781 kb on + strand, within A4249_RS12620at 2531.781 kb on + strand, within A4249_RS12620at 2531.782 kb on - strand, within A4249_RS12620at 2531.890 kb on - strand, within A4249_RS12620at 2531.965 kb on + strand, within A4249_RS12620at 2532.025 kb on + strand, within A4249_RS12620at 2532.025 kb on + strand, within A4249_RS12620at 2532.272 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.273 kb on + strand, within A4249_RS12620at 2532.274 kb on - strand, within A4249_RS12620

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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2,529,358 + A4249_RS12610 0.76 -1.9
2,529,358 + A4249_RS12610 0.76 +0.4
2,529,358 + A4249_RS12610 0.76 -3.0
2,529,359 - A4249_RS12610 0.76 -2.9
2,529,359 - A4249_RS12610 0.76 -3.0
2,529,400 + A4249_RS12610 0.77 -3.2
2,529,400 + A4249_RS12610 0.77 -1.3
2,529,400 + A4249_RS12610 0.77 +0.4
2,529,400 + A4249_RS12610 0.77 -4.0
2,529,400 + A4249_RS12610 0.77 -1.2
2,529,400 + A4249_RS12610 0.77 -2.8
2,529,400 + A4249_RS12610 0.77 -5.3
2,529,400 + A4249_RS12610 0.77 -3.6
2,529,400 + A4249_RS12610 0.77 -3.7
2,529,401 - A4249_RS12610 0.77 -0.6
2,529,401 - A4249_RS12610 0.77 -4.3
2,529,401 - A4249_RS12610 0.77 -1.2
2,529,401 - A4249_RS12610 0.77 -4.2
2,529,401 - A4249_RS12610 0.77 -2.2
2,529,401 - A4249_RS12610 0.77 -3.6
2,529,401 - A4249_RS12610 0.77 -2.4
2,529,401 - A4249_RS12610 0.77 -3.5
2,529,481 + A4249_RS12610 0.81 -3.8
2,529,481 + A4249_RS12610 0.81 -2.4
2,529,481 + A4249_RS12610 0.81 -0.6
2,529,481 + A4249_RS12610 0.81 -3.8
2,529,482 - A4249_RS12610 0.81 -2.6
2,529,482 - A4249_RS12610 0.81 +0.4
2,529,482 - A4249_RS12610 0.81 -3.4
2,529,482 - A4249_RS12610 0.81 -2.9
2,529,482 - A4249_RS12610 0.81 -3.2
2,529,487 + A4249_RS12610 0.81 -2.6
2,529,487 + A4249_RS12610 0.81 -3.9
2,529,487 + A4249_RS12610 0.81 -3.7
2,529,488 - A4249_RS12610 0.81 -1.2
2,529,614 - A4249_RS12610 0.87 -3.3
2,529,796 + -1.6
2,529,796 + -3.7
2,529,796 + -2.5
2,529,797 - -3.3
2,529,797 - -2.4
2,529,797 - -4.7
2,529,797 - -3.9
2,529,797 - -5.4
2,529,859 + -0.4
2,529,859 + -0.5
2,529,859 + +0.7
2,529,859 + -0.8
2,530,101 - -0.2
2,530,233 + +1.2
2,530,469 + A4249_RS12615 0.16 -0.6
2,530,470 - A4249_RS12615 0.16 -0.0
2,530,470 - A4249_RS12615 0.16 -0.6
2,530,470 - A4249_RS12615 0.16 +0.4
2,530,557 - A4249_RS12615 0.24 -0.4
2,530,694 + A4249_RS12615 0.36 +0.4
2,530,694 + A4249_RS12615 0.36 -0.2
2,530,695 - A4249_RS12615 0.36 -1.2
2,530,695 - A4249_RS12615 0.36 -0.1
2,530,695 - A4249_RS12615 0.36 +2.4
2,530,740 - A4249_RS12615 0.41 -0.9
2,530,929 + A4249_RS12615 0.58 +0.2
2,531,040 - A4249_RS12615 0.68 -0.6
2,531,467 - +0.2
2,531,531 + -2.4
2,531,531 + -0.2
2,531,532 - -0.6
2,531,595 + +1.7
2,531,595 + -0.1
2,531,595 + -1.3
2,531,595 + -0.3
2,531,595 + +1.1
2,531,595 + -0.4
2,531,595 + +0.3
2,531,595 + -0.8
2,531,596 - +2.4
2,531,596 - -1.0
2,531,596 - +0.2
2,531,596 - -0.5
2,531,781 + A4249_RS12620 0.14 -0.9
2,531,781 + A4249_RS12620 0.14 +0.2
2,531,781 + A4249_RS12620 0.14 -1.3
2,531,782 - A4249_RS12620 0.14 +0.8
2,531,890 - A4249_RS12620 0.21 +0.4
2,531,965 + A4249_RS12620 0.25 +0.9
2,532,025 + A4249_RS12620 0.29 -0.2
2,532,025 + A4249_RS12620 0.29 -0.2
2,532,272 + A4249_RS12620 0.44 +1.3
2,532,273 + A4249_RS12620 0.44 +0.6
2,532,273 + A4249_RS12620 0.44 -1.4
2,532,273 + A4249_RS12620 0.44 -0.0
2,532,273 + A4249_RS12620 0.44 +0.0
2,532,273 + A4249_RS12620 0.44 -0.4
2,532,273 + A4249_RS12620 0.44 -0.4
2,532,273 + A4249_RS12620 0.44 +0.1
2,532,274 - A4249_RS12620 0.44 +1.1

Or see this region's nucleotide sequence