Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12610 and A4249_RS12615 are separated by 405 nucleotides A4249_RS12615 and A4249_RS12620 are separated by 169 nucleotides
A4249_RS12610: A4249_RS12610 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 2,527,702 to 2,529,894
_RS12610
A4249_RS12615: A4249_RS12615 - recombinase RecA, at 2,530,300 to 2,531,382
_RS12615
A4249_RS12620: A4249_RS12620 - MHYT domain-containing protein, at 2,531,552 to 2,533,192
_RS12620
Position (kb)
2530
2531
2532 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2529.358 kb on + strand, within A4249_RS12610 at 2529.358 kb on + strand, within A4249_RS12610 at 2529.358 kb on + strand, within A4249_RS12610 at 2529.359 kb on - strand, within A4249_RS12610 at 2529.359 kb on - strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.400 kb on + strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.401 kb on - strand, within A4249_RS12610 at 2529.481 kb on + strand, within A4249_RS12610 at 2529.481 kb on + strand, within A4249_RS12610 at 2529.481 kb on + strand, within A4249_RS12610 at 2529.481 kb on + strand, within A4249_RS12610 at 2529.482 kb on - strand, within A4249_RS12610 at 2529.482 kb on - strand, within A4249_RS12610 at 2529.482 kb on - strand, within A4249_RS12610 at 2529.482 kb on - strand, within A4249_RS12610 at 2529.482 kb on - strand, within A4249_RS12610 at 2529.487 kb on + strand, within A4249_RS12610 at 2529.487 kb on + strand, within A4249_RS12610 at 2529.487 kb on + strand, within A4249_RS12610 at 2529.488 kb on - strand, within A4249_RS12610 at 2529.614 kb on - strand, within A4249_RS12610 at 2529.796 kb on + strand at 2529.796 kb on + strand at 2529.796 kb on + strand at 2529.797 kb on - strand at 2529.797 kb on - strand at 2529.797 kb on - strand at 2529.797 kb on - strand at 2529.797 kb on - strand at 2529.859 kb on + strand at 2529.859 kb on + strand at 2529.859 kb on + strand at 2529.859 kb on + strand at 2530.101 kb on - strand at 2530.233 kb on + strand at 2530.469 kb on + strand, within A4249_RS12615 at 2530.470 kb on - strand, within A4249_RS12615 at 2530.470 kb on - strand, within A4249_RS12615 at 2530.470 kb on - strand, within A4249_RS12615 at 2530.557 kb on - strand, within A4249_RS12615 at 2530.694 kb on + strand, within A4249_RS12615 at 2530.694 kb on + strand, within A4249_RS12615 at 2530.695 kb on - strand, within A4249_RS12615 at 2530.695 kb on - strand, within A4249_RS12615 at 2530.695 kb on - strand, within A4249_RS12615 at 2530.740 kb on - strand, within A4249_RS12615 at 2530.929 kb on + strand, within A4249_RS12615 at 2531.040 kb on - strand, within A4249_RS12615 at 2531.467 kb on - strand at 2531.531 kb on + strand at 2531.531 kb on + strand at 2531.532 kb on - strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.595 kb on + strand at 2531.596 kb on - strand at 2531.596 kb on - strand at 2531.596 kb on - strand at 2531.596 kb on - strand at 2531.781 kb on + strand, within A4249_RS12620 at 2531.781 kb on + strand, within A4249_RS12620 at 2531.781 kb on + strand, within A4249_RS12620 at 2531.782 kb on - strand, within A4249_RS12620 at 2531.890 kb on - strand, within A4249_RS12620 at 2531.965 kb on + strand, within A4249_RS12620 at 2532.025 kb on + strand, within A4249_RS12620 at 2532.025 kb on + strand, within A4249_RS12620 at 2532.272 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.273 kb on + strand, within A4249_RS12620 at 2532.274 kb on - strand, within A4249_RS12620
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 2,529,358 + A4249_RS12610 0.76 -1.9 2,529,358 + A4249_RS12610 0.76 +0.4 2,529,358 + A4249_RS12610 0.76 -3.0 2,529,359 - A4249_RS12610 0.76 -2.9 2,529,359 - A4249_RS12610 0.76 -3.0 2,529,400 + A4249_RS12610 0.77 -3.2 2,529,400 + A4249_RS12610 0.77 -1.3 2,529,400 + A4249_RS12610 0.77 +0.4 2,529,400 + A4249_RS12610 0.77 -4.0 2,529,400 + A4249_RS12610 0.77 -1.2 2,529,400 + A4249_RS12610 0.77 -2.8 2,529,400 + A4249_RS12610 0.77 -5.3 2,529,400 + A4249_RS12610 0.77 -3.6 2,529,400 + A4249_RS12610 0.77 -3.7 2,529,401 - A4249_RS12610 0.77 -0.6 2,529,401 - A4249_RS12610 0.77 -4.3 2,529,401 - A4249_RS12610 0.77 -1.2 2,529,401 - A4249_RS12610 0.77 -4.2 2,529,401 - A4249_RS12610 0.77 -2.2 2,529,401 - A4249_RS12610 0.77 -3.6 2,529,401 - A4249_RS12610 0.77 -2.4 2,529,401 - A4249_RS12610 0.77 -3.5 2,529,481 + A4249_RS12610 0.81 -3.8 2,529,481 + A4249_RS12610 0.81 -2.4 2,529,481 + A4249_RS12610 0.81 -0.6 2,529,481 + A4249_RS12610 0.81 -3.8 2,529,482 - A4249_RS12610 0.81 -2.6 2,529,482 - A4249_RS12610 0.81 +0.4 2,529,482 - A4249_RS12610 0.81 -3.4 2,529,482 - A4249_RS12610 0.81 -2.9 2,529,482 - A4249_RS12610 0.81 -3.2 2,529,487 + A4249_RS12610 0.81 -2.6 2,529,487 + A4249_RS12610 0.81 -3.9 2,529,487 + A4249_RS12610 0.81 -3.7 2,529,488 - A4249_RS12610 0.81 -1.2 2,529,614 - A4249_RS12610 0.87 -3.3 2,529,796 + -1.6 2,529,796 + -3.7 2,529,796 + -2.5 2,529,797 - -3.3 2,529,797 - -2.4 2,529,797 - -4.7 2,529,797 - -3.9 2,529,797 - -5.4 2,529,859 + -0.4 2,529,859 + -0.5 2,529,859 + +0.7 2,529,859 + -0.8 2,530,101 - -0.2 2,530,233 + +1.2 2,530,469 + A4249_RS12615 0.16 -0.6 2,530,470 - A4249_RS12615 0.16 -0.0 2,530,470 - A4249_RS12615 0.16 -0.6 2,530,470 - A4249_RS12615 0.16 +0.4 2,530,557 - A4249_RS12615 0.24 -0.4 2,530,694 + A4249_RS12615 0.36 +0.4 2,530,694 + A4249_RS12615 0.36 -0.2 2,530,695 - A4249_RS12615 0.36 -1.2 2,530,695 - A4249_RS12615 0.36 -0.1 2,530,695 - A4249_RS12615 0.36 +2.4 2,530,740 - A4249_RS12615 0.41 -0.9 2,530,929 + A4249_RS12615 0.58 +0.2 2,531,040 - A4249_RS12615 0.68 -0.6 2,531,467 - +0.2 2,531,531 + -2.4 2,531,531 + -0.2 2,531,532 - -0.6 2,531,595 + +1.7 2,531,595 + -0.1 2,531,595 + -1.3 2,531,595 + -0.3 2,531,595 + +1.1 2,531,595 + -0.4 2,531,595 + +0.3 2,531,595 + -0.8 2,531,596 - +2.4 2,531,596 - -1.0 2,531,596 - +0.2 2,531,596 - -0.5 2,531,781 + A4249_RS12620 0.14 -0.9 2,531,781 + A4249_RS12620 0.14 +0.2 2,531,781 + A4249_RS12620 0.14 -1.3 2,531,782 - A4249_RS12620 0.14 +0.8 2,531,890 - A4249_RS12620 0.21 +0.4 2,531,965 + A4249_RS12620 0.25 +0.9 2,532,025 + A4249_RS12620 0.29 -0.2 2,532,025 + A4249_RS12620 0.29 -0.2 2,532,272 + A4249_RS12620 0.44 +1.3 2,532,273 + A4249_RS12620 0.44 +0.6 2,532,273 + A4249_RS12620 0.44 -1.4 2,532,273 + A4249_RS12620 0.44 -0.0 2,532,273 + A4249_RS12620 0.44 +0.0 2,532,273 + A4249_RS12620 0.44 -0.4 2,532,273 + A4249_RS12620 0.44 -0.4 2,532,273 + A4249_RS12620 0.44 +0.1 2,532,274 - A4249_RS12620 0.44 +1.1
Or see this region's nucleotide sequence