Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12315

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12310 and A4249_RS12315 are separated by 4 nucleotidesA4249_RS12315 and A4249_RS12320 are separated by 32 nucleotidesA4249_RS12320 and A4249_RS12325 are separated by 57 nucleotides A4249_RS12310: A4249_RS12310 - polysaccharide biosynthesis/export family protein, at 2,472,273 to 2,473,445 _RS12310 A4249_RS12315: A4249_RS12315 - hypothetical protein, at 2,473,450 to 2,474,028 _RS12315 A4249_RS12320: A4249_RS12320 - acyl-CoA thioesterase, at 2,474,061 to 2,474,462 _RS12320 A4249_RS12325: A4249_RS12325 - peptide deformylase, at 2,474,520 to 2,475,095 _RS12325 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2473.407 kb on + strandat 2473.407 kb on + strandat 2473.407 kb on + strandat 2473.408 kb on - strandat 2473.408 kb on - strandat 2473.551 kb on + strand, within A4249_RS12315at 2473.552 kb on - strand, within A4249_RS12315at 2473.552 kb on - strand, within A4249_RS12315at 2473.619 kb on - strand, within A4249_RS12315at 2473.655 kb on - strand, within A4249_RS12315at 2473.691 kb on + strand, within A4249_RS12315at 2473.998 kb on + strandat 2474.027 kb on - strandat 2474.292 kb on + strand, within A4249_RS12320at 2474.292 kb on + strand, within A4249_RS12320at 2474.292 kb on + strand, within A4249_RS12320at 2474.292 kb on + strand, within A4249_RS12320at 2474.293 kb on - strand, within A4249_RS12320at 2474.293 kb on - strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.460 kb on + strandat 2474.460 kb on + strandat 2474.460 kb on + strandat 2474.461 kb on - strandat 2474.461 kb on - strandat 2474.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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2,473,407 + -1.2
2,473,407 + -0.6
2,473,407 + -0.8
2,473,408 - -0.6
2,473,408 - -0.6
2,473,551 + A4249_RS12315 0.17 -0.3
2,473,552 - A4249_RS12315 0.18 +1.7
2,473,552 - A4249_RS12315 0.18 +0.7
2,473,619 - A4249_RS12315 0.29 -0.9
2,473,655 - A4249_RS12315 0.35 +0.4
2,473,691 + A4249_RS12315 0.42 -0.2
2,473,998 + -0.3
2,474,027 - +2.2
2,474,292 + A4249_RS12320 0.57 -0.3
2,474,292 + A4249_RS12320 0.57 +0.8
2,474,292 + A4249_RS12320 0.57 +0.1
2,474,292 + A4249_RS12320 0.57 +0.2
2,474,293 - A4249_RS12320 0.58 -5.4
2,474,293 - A4249_RS12320 0.58 +0.1
2,474,409 + A4249_RS12320 0.87 +1.0
2,474,409 + A4249_RS12320 0.87 +0.6
2,474,409 + A4249_RS12320 0.87 +0.3
2,474,409 + A4249_RS12320 0.87 -0.7
2,474,409 + A4249_RS12320 0.87 +1.5
2,474,409 + A4249_RS12320 0.87 +0.2
2,474,410 - A4249_RS12320 0.87 -0.7
2,474,410 - A4249_RS12320 0.87 +0.1
2,474,410 - A4249_RS12320 0.87 -0.1
2,474,410 - A4249_RS12320 0.87 +0.4
2,474,410 - A4249_RS12320 0.87 +0.3
2,474,410 - A4249_RS12320 0.87 +2.6
2,474,460 + -3.7
2,474,460 + +0.7
2,474,460 + -1.2
2,474,461 - -0.1
2,474,461 - -1.2
2,474,461 - +1.2

Or see this region's nucleotide sequence