Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12210

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12200 and A4249_RS12205 are separated by 37 nucleotidesA4249_RS12205 and A4249_RS12210 overlap by 19 nucleotidesA4249_RS12210 and A4249_RS12215 overlap by 4 nucleotidesA4249_RS12215 and A4249_RS12220 are separated by 202 nucleotides A4249_RS12200: A4249_RS12200 - fructose-6-phosphate aldolase, at 2,451,526 to 2,452,179 _RS12200 A4249_RS12205: A4249_RS12205 - DUF484 family protein, at 2,452,217 to 2,452,930 _RS12205 A4249_RS12210: A4249_RS12210 - tyrosine recombinase XerC, at 2,452,912 to 2,453,841 _RS12210 A4249_RS12215: A4249_RS12215 - hypothetical protein, at 2,453,838 to 2,454,182 _RS12215 A4249_RS12220: A4249_RS12220 - retroviral-like aspartic protease family protein, at 2,454,385 to 2,455,332 _RS12220 Position (kb) 2452 2453 2454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.925 kb on - strand, within A4249_RS12200at 2451.976 kb on + strand, within A4249_RS12200at 2451.977 kb on - strand, within A4249_RS12200at 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.177 kb on + strandat 2452.178 kb on - strandat 2452.178 kb on - strandat 2452.708 kb on - strand, within A4249_RS12205at 2452.920 kb on + strandat 2453.008 kb on + strand, within A4249_RS12210at 2453.008 kb on + strand, within A4249_RS12210at 2453.029 kb on + strand, within A4249_RS12210at 2453.030 kb on - strand, within A4249_RS12210at 2453.030 kb on - strand, within A4249_RS12210at 2453.387 kb on - strand, within A4249_RS12210at 2453.530 kb on + strand, within A4249_RS12210at 2453.779 kb on + strandat 2453.780 kb on - strandat 2453.840 kb on - strandat 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.933 kb on - strand, within A4249_RS12215at 2453.933 kb on - strand, within A4249_RS12215at 2453.933 kb on - strand, within A4249_RS12215at 2453.984 kb on - strand, within A4249_RS12215at 2454.146 kb on + strand, within A4249_RS12215at 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.202 kb on + strandat 2454.210 kb on + strandat 2454.211 kb on - strandat 2454.233 kb on + strandat 2454.271 kb on + strandat 2454.272 kb on - strandat 2454.272 kb on - strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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2,451,923 + A4249_RS12200 0.61 +0.4
2,451,923 + A4249_RS12200 0.61 -3.5
2,451,923 + A4249_RS12200 0.61 -1.5
2,451,923 + A4249_RS12200 0.61 -0.5
2,451,924 - A4249_RS12200 0.61 -2.1
2,451,924 - A4249_RS12200 0.61 -0.8
2,451,924 - A4249_RS12200 0.61 +0.5
2,451,925 - A4249_RS12200 0.61 +0.4
2,451,976 + A4249_RS12200 0.69 -1.3
2,451,977 - A4249_RS12200 0.69 -1.2
2,452,170 + -1.0
2,452,170 + +0.4
2,452,170 + +0.3
2,452,170 + +0.9
2,452,170 + -0.3
2,452,170 + -0.1
2,452,170 + -1.8
2,452,170 + -0.3
2,452,170 + -0.2
2,452,171 - -0.9
2,452,171 - -0.0
2,452,171 - -0.3
2,452,171 - +0.4
2,452,171 - -0.4
2,452,171 - -1.0
2,452,177 + -0.4
2,452,178 - +0.4
2,452,178 - -1.3
2,452,708 - A4249_RS12205 0.69 +0.1
2,452,920 + -0.5
2,453,008 + A4249_RS12210 0.10 -1.2
2,453,008 + A4249_RS12210 0.10 -1.6
2,453,029 + A4249_RS12210 0.13 -1.9
2,453,030 - A4249_RS12210 0.13 -2.1
2,453,030 - A4249_RS12210 0.13 -0.6
2,453,387 - A4249_RS12210 0.51 +0.4
2,453,530 + A4249_RS12210 0.66 -0.2
2,453,779 + +0.4
2,453,780 - +0.4
2,453,840 - -0.4
2,453,932 + A4249_RS12215 0.27 +1.6
2,453,932 + A4249_RS12215 0.27 +0.1
2,453,932 + A4249_RS12215 0.27 +0.6
2,453,932 + A4249_RS12215 0.27 +0.4
2,453,932 + A4249_RS12215 0.27 +0.4
2,453,933 - A4249_RS12215 0.28 +0.4
2,453,933 - A4249_RS12215 0.28 +1.4
2,453,933 - A4249_RS12215 0.28 +0.8
2,453,984 - A4249_RS12215 0.42 -0.4
2,454,146 + A4249_RS12215 0.89 -0.3
2,454,167 + -0.2
2,454,167 + -0.0
2,454,167 + +0.3
2,454,167 + +0.4
2,454,167 + -1.2
2,454,167 + +0.1
2,454,167 + +1.1
2,454,167 + -0.4
2,454,168 - +0.4
2,454,168 - +0.4
2,454,168 - -1.6
2,454,168 - +0.7
2,454,168 - -2.8
2,454,168 - -0.0
2,454,168 - -0.2
2,454,168 - -0.1
2,454,168 - +0.3
2,454,168 - +0.2
2,454,168 - +0.8
2,454,202 + +0.7
2,454,210 + -0.8
2,454,211 - -0.4
2,454,233 + -1.3
2,454,271 + +0.5
2,454,272 - +0.9
2,454,272 - +0.4
2,454,293 + -0.2
2,454,293 + +1.2
2,454,293 + +0.4
2,454,293 + +0.1
2,454,293 + +2.0
2,454,293 + -1.0
2,454,293 + +1.8
2,454,293 + -0.5
2,454,293 + -0.3
2,454,293 + -1.9
2,454,293 + +0.1
2,454,293 + +0.8
2,454,293 + +0.4
2,454,293 + +0.0
2,454,293 + -0.6
2,454,293 + -0.5
2,454,293 + -0.4
2,454,293 + -1.2
2,454,293 + +1.4
2,454,293 + -0.7
2,454,293 + -0.9
2,454,294 - -0.2
2,454,294 - +1.7
2,454,294 - +0.9
2,454,294 - -1.4
2,454,294 - -0.5
2,454,294 - -1.5
2,454,294 - +2.0
2,454,294 - -0.6
2,454,294 - -0.3
2,454,294 - +1.5
2,454,294 - +2.0
2,454,294 - +1.0
2,454,294 - -0.4
2,454,294 - +1.4
2,454,294 - -0.0
2,454,294 - -0.9
2,454,294 - +1.1
2,454,294 - -0.9
2,454,294 - +1.5
2,454,294 - -0.7
2,454,294 - -0.7
2,454,322 + -0.3

Or see this region's nucleotide sequence