Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10020

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10010 and A4249_RS10015 overlap by 1 nucleotidesA4249_RS10015 and A4249_RS10020 are separated by 1 nucleotidesA4249_RS10020 and A4249_RS10025 are separated by 19 nucleotides A4249_RS10010: A4249_RS10010 - 2-isopropylmalate synthase, at 2,009,203 to 2,010,453 _RS10010 A4249_RS10015: A4249_RS10015 - ACT domain-containing protein, at 2,010,453 to 2,010,704 _RS10015 A4249_RS10020: A4249_RS10020 - acetolactate synthase 2 catalytic subunit, at 2,010,706 to 2,012,418 _RS10020 A4249_RS10025: A4249_RS10025 - ketol-acid reductoisomerase, at 2,012,438 to 2,013,451 _RS10025 Position (kb) 2010 2011 2012 2013Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2010.005 kb on + strand, within A4249_RS10010at 2010.005 kb on + strand, within A4249_RS10010at 2010.005 kb on + strand, within A4249_RS10010at 2010.418 kb on + strandat 2010.427 kb on + strandat 2010.434 kb on - strandat 2010.434 kb on - strandat 2010.447 kb on + strandat 2010.932 kb on + strand, within A4249_RS10020at 2010.932 kb on + strand, within A4249_RS10020at 2010.932 kb on + strand, within A4249_RS10020at 2010.933 kb on - strand, within A4249_RS10020at 2010.933 kb on - strand, within A4249_RS10020at 2011.292 kb on + strand, within A4249_RS10020at 2011.292 kb on + strand, within A4249_RS10020at 2011.292 kb on + strand, within A4249_RS10020at 2011.292 kb on + strand, within A4249_RS10020at 2011.292 kb on + strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.293 kb on - strand, within A4249_RS10020at 2011.763 kb on + strand, within A4249_RS10020at 2011.763 kb on + strand, within A4249_RS10020at 2011.763 kb on + strand, within A4249_RS10020at 2011.763 kb on + strand, within A4249_RS10020at 2011.763 kb on + strand, within A4249_RS10020at 2011.764 kb on - strand, within A4249_RS10020at 2011.764 kb on - strand, within A4249_RS10020at 2011.764 kb on - strand, within A4249_RS10020at 2011.764 kb on - strand, within A4249_RS10020at 2011.764 kb on - strand, within A4249_RS10020at 2011.859 kb on + strand, within A4249_RS10020at 2011.859 kb on + strand, within A4249_RS10020at 2011.859 kb on + strand, within A4249_RS10020at 2011.859 kb on + strand, within A4249_RS10020at 2011.859 kb on + strand, within A4249_RS10020at 2011.860 kb on - strand, within A4249_RS10020at 2011.939 kb on - strand, within A4249_RS10020at 2012.029 kb on - strand, within A4249_RS10020at 2012.083 kb on + strand, within A4249_RS10020at 2012.198 kb on + strand, within A4249_RS10020at 2012.199 kb on - strand, within A4249_RS10020at 2012.199 kb on - strand, within A4249_RS10020at 2012.199 kb on - strand, within A4249_RS10020at 2012.276 kb on + strandat 2012.277 kb on - strandat 2012.277 kb on - strandat 2012.277 kb on - strandat 2012.277 kb on - strandat 2012.277 kb on - strandat 2012.277 kb on - strandat 2012.277 kb on - strandat 2012.544 kb on + strand, within A4249_RS10025at 2012.544 kb on + strand, within A4249_RS10025at 2012.545 kb on - strand, within A4249_RS10025at 2012.545 kb on - strand, within A4249_RS10025at 2012.545 kb on - strand, within A4249_RS10025at 2012.679 kb on + strand, within A4249_RS10025at 2012.679 kb on + strand, within A4249_RS10025at 2012.679 kb on + strand, within A4249_RS10025at 2012.679 kb on + strand, within A4249_RS10025at 2012.680 kb on - strand, within A4249_RS10025at 2012.680 kb on - strand, within A4249_RS10025at 2012.730 kb on + strand, within A4249_RS10025at 2012.730 kb on + strand, within A4249_RS10025at 2012.730 kb on + strand, within A4249_RS10025at 2012.731 kb on - strand, within A4249_RS10025at 2012.731 kb on - strand, within A4249_RS10025at 2012.775 kb on + strand, within A4249_RS10025at 2012.776 kb on - strand, within A4249_RS10025at 2012.947 kb on - strand, within A4249_RS10025at 2012.947 kb on - strand, within A4249_RS10025at 2012.947 kb on - strand, within A4249_RS10025at 2013.108 kb on + strand, within A4249_RS10025at 2013.108 kb on + strand, within A4249_RS10025at 2013.109 kb on - strand, within A4249_RS10025at 2013.109 kb on - strand, within A4249_RS10025at 2013.109 kb on - strand, within A4249_RS10025at 2013.109 kb on - strand, within A4249_RS10025at 2013.109 kb on - strand, within A4249_RS10025at 2013.180 kb on + strand, within A4249_RS10025at 2013.180 kb on + strand, within A4249_RS10025at 2013.180 kb on + strand, within A4249_RS10025at 2013.180 kb on + strand, within A4249_RS10025at 2013.181 kb on - strand, within A4249_RS10025at 2013.181 kb on - strand, within A4249_RS10025at 2013.181 kb on - strand, within A4249_RS10025at 2013.181 kb on - strand, within A4249_RS10025

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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2,010,005 + A4249_RS10010 0.64 -4.8
2,010,005 + A4249_RS10010 0.64 -1.0
2,010,005 + A4249_RS10010 0.64 -4.2
2,010,418 + -3.8
2,010,427 + +0.3
2,010,434 - -0.7
2,010,434 - -3.2
2,010,447 + -3.4
2,010,932 + A4249_RS10020 0.13 -1.3
2,010,932 + A4249_RS10020 0.13 -3.9
2,010,932 + A4249_RS10020 0.13 -3.2
2,010,933 - A4249_RS10020 0.13 -2.9
2,010,933 - A4249_RS10020 0.13 -2.5
2,011,292 + A4249_RS10020 0.34 -2.3
2,011,292 + A4249_RS10020 0.34 -5.9
2,011,292 + A4249_RS10020 0.34 -2.9
2,011,292 + A4249_RS10020 0.34 -2.5
2,011,292 + A4249_RS10020 0.34 -2.5
2,011,293 - A4249_RS10020 0.34 -2.3
2,011,293 - A4249_RS10020 0.34 -2.0
2,011,293 - A4249_RS10020 0.34 -3.3
2,011,293 - A4249_RS10020 0.34 -2.1
2,011,293 - A4249_RS10020 0.34 -1.3
2,011,293 - A4249_RS10020 0.34 -2.5
2,011,293 - A4249_RS10020 0.34 -2.3
2,011,293 - A4249_RS10020 0.34 -4.3
2,011,763 + A4249_RS10020 0.62 -2.6
2,011,763 + A4249_RS10020 0.62 -5.1
2,011,763 + A4249_RS10020 0.62 -2.4
2,011,763 + A4249_RS10020 0.62 -3.2
2,011,763 + A4249_RS10020 0.62 -2.3
2,011,764 - A4249_RS10020 0.62 -4.4
2,011,764 - A4249_RS10020 0.62 -1.7
2,011,764 - A4249_RS10020 0.62 -0.7
2,011,764 - A4249_RS10020 0.62 -4.6
2,011,764 - A4249_RS10020 0.62 -1.7
2,011,859 + A4249_RS10020 0.67 -4.4
2,011,859 + A4249_RS10020 0.67 -3.2
2,011,859 + A4249_RS10020 0.67 +0.3
2,011,859 + A4249_RS10020 0.67 -4.6
2,011,859 + A4249_RS10020 0.67 -3.9
2,011,860 - A4249_RS10020 0.67 +0.3
2,011,939 - A4249_RS10020 0.72 -3.9
2,012,029 - A4249_RS10020 0.77 -3.7
2,012,083 + A4249_RS10020 0.80 -2.7
2,012,198 + A4249_RS10020 0.87 -4.1
2,012,199 - A4249_RS10020 0.87 -3.5
2,012,199 - A4249_RS10020 0.87 -3.6
2,012,199 - A4249_RS10020 0.87 -3.4
2,012,276 + -3.4
2,012,277 - -3.5
2,012,277 - -4.8
2,012,277 - -3.3
2,012,277 - -2.0
2,012,277 - -3.0
2,012,277 - -3.3
2,012,277 - -0.7
2,012,544 + A4249_RS10025 0.10 -2.3
2,012,544 + A4249_RS10025 0.10 -1.5
2,012,545 - A4249_RS10025 0.11 +0.3
2,012,545 - A4249_RS10025 0.11 -2.3
2,012,545 - A4249_RS10025 0.11 -2.0
2,012,679 + A4249_RS10025 0.24 -3.7
2,012,679 + A4249_RS10025 0.24 -6.1
2,012,679 + A4249_RS10025 0.24 -2.0
2,012,679 + A4249_RS10025 0.24 -3.2
2,012,680 - A4249_RS10025 0.24 -2.7
2,012,680 - A4249_RS10025 0.24 -0.7
2,012,730 + A4249_RS10025 0.29 -3.3
2,012,730 + A4249_RS10025 0.29 -3.0
2,012,730 + A4249_RS10025 0.29 -2.3
2,012,731 - A4249_RS10025 0.29 -3.3
2,012,731 - A4249_RS10025 0.29 -2.9
2,012,775 + A4249_RS10025 0.33 -2.9
2,012,776 - A4249_RS10025 0.33 -0.7
2,012,947 - A4249_RS10025 0.50 -1.3
2,012,947 - A4249_RS10025 0.50 -1.7
2,012,947 - A4249_RS10025 0.50 -3.5
2,013,108 + A4249_RS10025 0.66 -3.4
2,013,108 + A4249_RS10025 0.66 -2.9
2,013,109 - A4249_RS10025 0.66 -2.9
2,013,109 - A4249_RS10025 0.66 -3.7
2,013,109 - A4249_RS10025 0.66 -2.9
2,013,109 - A4249_RS10025 0.66 -2.4
2,013,109 - A4249_RS10025 0.66 -5.4
2,013,180 + A4249_RS10025 0.73 -2.1
2,013,180 + A4249_RS10025 0.73 -3.1
2,013,180 + A4249_RS10025 0.73 -2.5
2,013,180 + A4249_RS10025 0.73 -3.4
2,013,181 - A4249_RS10025 0.73 -2.3
2,013,181 - A4249_RS10025 0.73 -1.3
2,013,181 - A4249_RS10025 0.73 -3.0
2,013,181 - A4249_RS10025 0.73 -2.7

Or see this region's nucleotide sequence