Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09700

Experiment: Tween 20 (C), 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS09695 and A4249_RS09700 are separated by 79 nucleotidesA4249_RS09700 and A4249_RS09705 are separated by 48 nucleotidesA4249_RS09705 and A4249_RS09710 are separated by 41 nucleotides A4249_RS09695: A4249_RS09695 - polyprenyl synthetase family protein, at 1,934,262 to 1,935,137 _RS09695 A4249_RS09700: A4249_RS09700 - exodeoxyribonuclease VII small subunit, at 1,935,217 to 1,935,468 _RS09700 A4249_RS09705: A4249_RS09705 - histidine phosphatase family protein, at 1,935,517 to 1,936,179 _RS09705 A4249_RS09710: A4249_RS09710 - histone deacetylase family protein, at 1,936,221 to 1,937,141 _RS09710 Position (kb) 1935 1936Strain fitness (log2 ratio) -2 -1 0 1at 1934.277 kb on + strandat 1934.277 kb on + strandat 1934.278 kb on - strandat 1934.278 kb on - strandat 1934.500 kb on + strand, within A4249_RS09695at 1934.500 kb on + strand, within A4249_RS09695at 1934.501 kb on - strand, within A4249_RS09695at 1934.501 kb on - strand, within A4249_RS09695at 1934.501 kb on - strand, within A4249_RS09695at 1934.590 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.908 kb on + strand, within A4249_RS09695at 1934.909 kb on - strand, within A4249_RS09695at 1934.946 kb on + strand, within A4249_RS09695at 1934.946 kb on + strand, within A4249_RS09695at 1935.031 kb on + strand, within A4249_RS09695at 1935.031 kb on + strand, within A4249_RS09695at 1935.031 kb on + strand, within A4249_RS09695at 1935.032 kb on - strand, within A4249_RS09695at 1935.199 kb on + strandat 1935.200 kb on - strandat 1935.344 kb on + strand, within A4249_RS09700at 1935.345 kb on - strand, within A4249_RS09700at 1935.481 kb on - strandat 1936.266 kb on + strandat 1936.266 kb on + strandat 1936.267 kb on - strandat 1936.267 kb on - strandat 1936.267 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
remove
1,934,277 + -0.8
1,934,277 + +0.5
1,934,278 - +0.2
1,934,278 - -0.1
1,934,500 + A4249_RS09695 0.27 -0.7
1,934,500 + A4249_RS09695 0.27 -0.5
1,934,501 - A4249_RS09695 0.27 -1.7
1,934,501 - A4249_RS09695 0.27 -1.8
1,934,501 - A4249_RS09695 0.27 -2.1
1,934,590 + A4249_RS09695 0.37 -0.8
1,934,830 + A4249_RS09695 0.65 -0.6
1,934,830 + A4249_RS09695 0.65 -0.5
1,934,830 + A4249_RS09695 0.65 +0.5
1,934,830 + A4249_RS09695 0.65 -0.0
1,934,830 + A4249_RS09695 0.65 -0.2
1,934,830 + A4249_RS09695 0.65 -1.5
1,934,830 + A4249_RS09695 0.65 -1.0
1,934,830 + A4249_RS09695 0.65 -0.3
1,934,830 + A4249_RS09695 0.65 -0.4
1,934,830 + A4249_RS09695 0.65 -0.5
1,934,831 - A4249_RS09695 0.65 -1.2
1,934,831 - A4249_RS09695 0.65 +0.3
1,934,831 - A4249_RS09695 0.65 -0.6
1,934,831 - A4249_RS09695 0.65 -0.9
1,934,831 - A4249_RS09695 0.65 +0.2
1,934,831 - A4249_RS09695 0.65 -0.8
1,934,831 - A4249_RS09695 0.65 -0.8
1,934,908 + A4249_RS09695 0.74 -1.6
1,934,909 - A4249_RS09695 0.74 -0.5
1,934,946 + A4249_RS09695 0.78 +0.3
1,934,946 + A4249_RS09695 0.78 -1.7
1,935,031 + A4249_RS09695 0.88 -1.3
1,935,031 + A4249_RS09695 0.88 -0.1
1,935,031 + A4249_RS09695 0.88 -0.4
1,935,032 - A4249_RS09695 0.88 +0.0
1,935,199 + -0.8
1,935,200 - -0.0
1,935,344 + A4249_RS09700 0.50 -1.3
1,935,345 - A4249_RS09700 0.51 -1.3
1,935,481 - -0.2
1,936,266 + -0.1
1,936,266 + +0.9
1,936,267 - +0.5
1,936,267 - +0.4
1,936,267 - -0.9

Or see this region's nucleotide sequence