Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09115 and A4249_RS16940 are separated by 220 nucleotides A4249_RS16940 and A4249_RS09120 are separated by 128 nucleotides A4249_RS09120 and A4249_RS09125 are separated by 12 nucleotides A4249_RS09125 and A4249_RS09130 are separated by 195 nucleotides
A4249_RS09115: A4249_RS09115 - sigma-54 dependent transcriptional regulator, at 1,825,224 to 1,826,675
_RS09115
A4249_RS16940: A4249_RS16940 - GIY-YIG nuclease family protein, at 1,826,896 to 1,826,994
_RS16940
A4249_RS09120: A4249_RS09120 - hypothetical protein, at 1,827,123 to 1,827,503
_RS09120
A4249_RS09125: A4249_RS09125 - DUF2312 domain-containing protein, at 1,827,516 to 1,827,791
_RS09125
A4249_RS09130: A4249_RS09130 - type B 50S ribosomal protein L36, at 1,827,987 to 1,828,112
_RS09130
Position (kb)
1827
1828 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1826.130 kb on + strand, within A4249_RS09115 at 1826.130 kb on + strand, within A4249_RS09115 at 1826.131 kb on - strand, within A4249_RS09115 at 1826.131 kb on - strand, within A4249_RS09115 at 1826.565 kb on + strand at 1826.565 kb on + strand at 1826.565 kb on + strand at 1826.565 kb on + strand at 1826.566 kb on - strand at 1826.566 kb on - strand at 1826.566 kb on - strand at 1826.622 kb on + strand at 1826.680 kb on + strand at 1826.773 kb on + strand at 1826.773 kb on + strand at 1826.773 kb on + strand at 1826.773 kb on + strand at 1826.773 kb on + strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.774 kb on - strand at 1826.784 kb on - strand at 1826.784 kb on - strand at 1826.900 kb on + strand at 1826.900 kb on + strand at 1826.900 kb on + strand at 1826.901 kb on - strand at 1826.924 kb on + strand, within A4249_RS16940 at 1826.925 kb on - strand, within A4249_RS16940 at 1826.979 kb on - strand, within A4249_RS16940 at 1826.979 kb on - strand, within A4249_RS16940 at 1826.979 kb on - strand, within A4249_RS16940 at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.002 kb on + strand at 1827.003 kb on - strand at 1827.003 kb on - strand at 1827.003 kb on - strand at 1827.003 kb on - strand at 1827.003 kb on - strand at 1827.003 kb on - strand at 1827.034 kb on - strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.035 kb on + strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.036 kb on - strand at 1827.066 kb on + strand at 1827.066 kb on + strand at 1827.066 kb on + strand at 1827.067 kb on - strand at 1827.165 kb on + strand, within A4249_RS09120 at 1827.165 kb on + strand, within A4249_RS09120 at 1827.166 kb on - strand, within A4249_RS09120 at 1827.166 kb on - strand, within A4249_RS09120 at 1827.166 kb on - strand, within A4249_RS09120 at 1827.166 kb on - strand, within A4249_RS09120 at 1827.517 kb on + strand at 1827.517 kb on + strand at 1827.517 kb on + strand at 1827.517 kb on + strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.518 kb on - strand at 1827.824 kb on - strand at 1827.989 kb on - strand at 1828.263 kb on + strand at 1828.263 kb on + strand at 1828.264 kb on - strand at 1828.264 kb on - strand at 1828.265 kb on + strand at 1828.265 kb on + strand at 1828.265 kb on + strand at 1828.265 kb on + strand at 1828.265 kb on + strand at 1828.265 kb on + strand at 1828.266 kb on - strand at 1828.266 kb on - strand at 1828.266 kb on - strand at 1828.266 kb on - strand at 1828.266 kb on - strand at 1828.266 kb on - strand at 1828.266 kb on - strand at 1828.306 kb on + strand at 1828.306 kb on + strand at 1828.306 kb on + strand at 1828.306 kb on + strand at 1828.306 kb on + strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.307 kb on - strand at 1828.308 kb on + strand at 1828.310 kb on + strand at 1828.310 kb on + strand at 1828.310 kb on + strand at 1828.310 kb on + strand at 1828.311 kb on - strand at 1828.311 kb on - strand at 1828.311 kb on - strand at 1828.311 kb on - strand at 1828.311 kb on - strand at 1828.311 kb on - strand at 1828.349 kb on + strand at 1828.425 kb on + strand at 1828.425 kb on + strand at 1828.425 kb on + strand at 1828.425 kb on + strand at 1828.425 kb on + strand at 1828.426 kb on - strand at 1828.426 kb on - strand at 1828.426 kb on - strand at 1828.426 kb on - strand at 1828.427 kb on + strand at 1828.428 kb on - strand at 1828.428 kb on - strand at 1828.439 kb on + strand at 1828.439 kb on + strand at 1828.464 kb on + strand at 1828.464 kb on + strand at 1828.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 1,826,130 + A4249_RS09115 0.62 -0.3 1,826,130 + A4249_RS09115 0.62 +2.6 1,826,131 - A4249_RS09115 0.62 +0.8 1,826,131 - A4249_RS09115 0.62 +0.7 1,826,565 + -2.7 1,826,565 + -0.5 1,826,565 + -1.6 1,826,565 + -1.3 1,826,566 - -0.8 1,826,566 - -2.2 1,826,566 - -0.5 1,826,622 + -1.0 1,826,680 + -0.6 1,826,773 + -0.2 1,826,773 + +1.0 1,826,773 + -0.5 1,826,773 + +0.1 1,826,773 + +0.3 1,826,774 - +0.0 1,826,774 - -1.1 1,826,774 - +0.6 1,826,774 - +0.1 1,826,774 - +0.5 1,826,774 - +1.2 1,826,774 - +0.3 1,826,774 - -1.7 1,826,774 - +0.3 1,826,774 - +2.3 1,826,784 - -1.1 1,826,784 - -1.1 1,826,900 + +0.6 1,826,900 + +0.2 1,826,900 + -1.7 1,826,901 - -1.5 1,826,924 + A4249_RS16940 0.28 -0.8 1,826,925 - A4249_RS16940 0.29 +0.7 1,826,979 - A4249_RS16940 0.84 +2.3 1,826,979 - A4249_RS16940 0.84 -0.7 1,826,979 - A4249_RS16940 0.84 -1.3 1,827,002 + +0.6 1,827,002 + -1.5 1,827,002 + -1.1 1,827,002 + -1.5 1,827,002 + -0.1 1,827,002 + +0.1 1,827,002 + +0.1 1,827,002 + -0.2 1,827,002 + -0.9 1,827,003 - +1.5 1,827,003 - -1.2 1,827,003 - +0.3 1,827,003 - +0.3 1,827,003 - +0.1 1,827,003 - +0.1 1,827,034 - +1.8 1,827,035 + +0.8 1,827,035 + +0.1 1,827,035 + +1.5 1,827,035 + +0.7 1,827,035 + +0.4 1,827,035 + +0.6 1,827,035 + -0.2 1,827,035 + +0.3 1,827,035 + +0.6 1,827,035 + +0.5 1,827,035 + -0.1 1,827,035 + +0.3 1,827,035 + +0.4 1,827,035 + +2.4 1,827,035 + -0.7 1,827,035 + +0.6 1,827,035 + -0.6 1,827,036 - +0.2 1,827,036 - -2.5 1,827,036 - +0.5 1,827,036 - +1.3 1,827,036 - +0.7 1,827,036 - +0.3 1,827,036 - +0.3 1,827,036 - +0.7 1,827,036 - +0.6 1,827,036 - -0.3 1,827,036 - +0.3 1,827,036 - -0.2 1,827,036 - -0.4 1,827,036 - -0.6 1,827,066 + +0.8 1,827,066 + +0.5 1,827,066 + -1.4 1,827,067 - -0.7 1,827,165 + A4249_RS09120 0.11 +0.9 1,827,165 + A4249_RS09120 0.11 -0.1 1,827,166 - A4249_RS09120 0.11 -0.5 1,827,166 - A4249_RS09120 0.11 +0.7 1,827,166 - A4249_RS09120 0.11 -0.4 1,827,166 - A4249_RS09120 0.11 +2.5 1,827,517 + +0.5 1,827,517 + -0.7 1,827,517 + +0.3 1,827,517 + -0.5 1,827,518 - -1.6 1,827,518 - -0.2 1,827,518 - +0.8 1,827,518 - +0.5 1,827,518 - -0.0 1,827,518 - +0.1 1,827,518 - -0.2 1,827,518 - -0.6 1,827,518 - -1.3 1,827,518 - -0.3 1,827,824 - -2.5 1,827,989 - -1.0 1,828,263 + -0.5 1,828,263 + -0.4 1,828,264 - -1.6 1,828,264 - -1.9 1,828,265 + +1.4 1,828,265 + +0.1 1,828,265 + +0.6 1,828,265 + +1.8 1,828,265 + +0.5 1,828,265 + +1.3 1,828,266 - -0.5 1,828,266 - -0.3 1,828,266 - -0.3 1,828,266 - +0.0 1,828,266 - -1.5 1,828,266 - +0.8 1,828,266 - -1.0 1,828,306 + +0.3 1,828,306 + -1.2 1,828,306 + -0.3 1,828,306 + -1.1 1,828,306 + +0.1 1,828,307 - +1.1 1,828,307 - -0.5 1,828,307 - -0.5 1,828,307 - -0.2 1,828,307 - +0.2 1,828,307 - -0.8 1,828,307 - +0.1 1,828,307 - +0.3 1,828,307 - -0.3 1,828,307 - -3.2 1,828,307 - +0.1 1,828,307 - +0.1 1,828,307 - +0.3 1,828,307 - +1.5 1,828,307 - +0.7 1,828,307 - +0.8 1,828,307 - -0.7 1,828,308 + -0.5 1,828,310 + +0.3 1,828,310 + -0.2 1,828,310 + +0.9 1,828,310 + +0.3 1,828,311 - -0.5 1,828,311 - +2.0 1,828,311 - +0.2 1,828,311 - +0.3 1,828,311 - +0.6 1,828,311 - +0.6 1,828,349 + +0.4 1,828,425 + +0.3 1,828,425 + -1.3 1,828,425 + -0.2 1,828,425 + +0.3 1,828,425 + -1.7 1,828,426 - +1.0 1,828,426 - -0.5 1,828,426 - -0.4 1,828,426 - +0.6 1,828,427 + -2.9 1,828,428 - +0.5 1,828,428 - +1.8 1,828,439 + +1.3 1,828,439 + -1.0 1,828,464 + +1.1 1,828,464 + -0.1 1,828,465 - +0.8
Or see this region's nucleotide sequence