Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS08185 and A4249_RS08190 are separated by 86 nucleotides A4249_RS08190 and A4249_RS08195 are separated by 60 nucleotides A4249_RS08195 and A4249_RS08200 overlap by 1 nucleotides
A4249_RS08185: A4249_RS08185 - YciI family protein, at 1,644,843 to 1,645,166
_RS08185
A4249_RS08190: A4249_RS08190 - DnaA/Hda family protein, at 1,645,253 to 1,645,933
_RS08190
A4249_RS08195: A4249_RS08195 - RNA degradosome polyphosphate kinase, at 1,645,994 to 1,648,210
_RS08195
A4249_RS08200: A4249_RS08200 - Ppx/GppA phosphatase family protein, at 1,648,210 to 1,649,697
_RS08200
Position (kb)
1645
1646
1647
1648
1649 Strain fitness (log2 ratio)
-2
-1
0
1 at 1645.107 kb on + strand, within A4249_RS08185 at 1645.107 kb on + strand, within A4249_RS08185 at 1645.107 kb on + strand, within A4249_RS08185 at 1645.107 kb on + strand, within A4249_RS08185 at 1645.241 kb on + strand at 1648.285 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.318 kb on + strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.319 kb on - strand at 1648.320 kb on + strand at 1648.321 kb on - strand at 1648.321 kb on - strand at 1648.321 kb on - strand at 1648.573 kb on + strand, within A4249_RS08200 at 1648.573 kb on + strand, within A4249_RS08200 at 1648.573 kb on + strand, within A4249_RS08200 at 1648.574 kb on - strand, within A4249_RS08200 at 1648.589 kb on + strand, within A4249_RS08200 at 1648.589 kb on + strand, within A4249_RS08200 at 1648.589 kb on + strand, within A4249_RS08200 at 1648.590 kb on - strand, within A4249_RS08200 at 1648.773 kb on + strand, within A4249_RS08200 at 1648.774 kb on - strand, within A4249_RS08200 at 1648.774 kb on - strand, within A4249_RS08200 at 1648.774 kb on - strand, within A4249_RS08200 at 1648.774 kb on - strand, within A4249_RS08200 at 1648.811 kb on - strand, within A4249_RS08200 at 1648.811 kb on - strand, within A4249_RS08200 at 1648.892 kb on - strand, within A4249_RS08200 at 1649.006 kb on - strand, within A4249_RS08200 at 1649.006 kb on - strand, within A4249_RS08200
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 1,645,107 + A4249_RS08185 0.81 -0.6 1,645,107 + A4249_RS08185 0.81 -0.0 1,645,107 + A4249_RS08185 0.81 +0.2 1,645,107 + A4249_RS08185 0.81 -0.3 1,645,241 + -1.8 1,648,285 + -0.8 1,648,318 + -0.5 1,648,318 + -0.5 1,648,318 + -0.6 1,648,318 + -0.5 1,648,318 + -0.4 1,648,318 + -1.2 1,648,318 + -0.4 1,648,318 + -0.4 1,648,319 - -0.3 1,648,319 - -1.1 1,648,319 - -0.5 1,648,319 - -0.6 1,648,319 - -0.7 1,648,319 - -1.0 1,648,319 - -0.8 1,648,319 - -0.3 1,648,319 - -0.3 1,648,320 + -1.0 1,648,321 - -0.3 1,648,321 - -0.5 1,648,321 - -0.5 1,648,573 + A4249_RS08200 0.24 -0.9 1,648,573 + A4249_RS08200 0.24 -0.9 1,648,573 + A4249_RS08200 0.24 -0.6 1,648,574 - A4249_RS08200 0.24 -0.8 1,648,589 + A4249_RS08200 0.25 -0.5 1,648,589 + A4249_RS08200 0.25 -0.3 1,648,589 + A4249_RS08200 0.25 -0.4 1,648,590 - A4249_RS08200 0.26 -0.8 1,648,773 + A4249_RS08200 0.38 -0.7 1,648,774 - A4249_RS08200 0.38 -0.8 1,648,774 - A4249_RS08200 0.38 -0.5 1,648,774 - A4249_RS08200 0.38 -0.9 1,648,774 - A4249_RS08200 0.38 -0.3 1,648,811 - A4249_RS08200 0.40 -0.6 1,648,811 - A4249_RS08200 0.40 -0.5 1,648,892 - A4249_RS08200 0.46 -1.9 1,649,006 - A4249_RS08200 0.53 -0.7 1,649,006 - A4249_RS08200 0.53 +0.0
Or see this region's nucleotide sequence