Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07385

Experiment: Tween 20 (C), 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS07380 and A4249_RS07385 are separated by 310 nucleotidesA4249_RS07385 and A4249_RS07390 are separated by 147 nucleotides A4249_RS07380: A4249_RS07380 - exopolysaccharide biosynthesis protein, at 1,471,341 to 1,472,105 _RS07380 A4249_RS07385: A4249_RS07385 - recombinase family protein, at 1,472,416 to 1,474,128 _RS07385 A4249_RS07390: A4249_RS07390 - T3/T7 RNA polymerase, at 1,474,276 to 1,476,609 _RS07390 Position (kb) 1472 1473 1474 1475Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1471.728 kb on + strand, within A4249_RS07380at 1471.729 kb on - strand, within A4249_RS07380at 1471.729 kb on - strand, within A4249_RS07380at 1472.028 kb on + strand, within A4249_RS07380at 1472.028 kb on + strand, within A4249_RS07380at 1472.028 kb on + strand, within A4249_RS07380at 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.029 kb on - strandat 1472.277 kb on + strandat 1472.277 kb on + strandat 1472.278 kb on - strandat 1472.278 kb on - strandat 1472.278 kb on - strandat 1472.386 kb on + strandat 1472.386 kb on + strandat 1472.386 kb on + strandat 1472.386 kb on + strandat 1472.386 kb on + strandat 1472.386 kb on + strandat 1472.387 kb on - strandat 1472.387 kb on - strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.440 kb on + strandat 1472.441 kb on - strandat 1472.441 kb on - strandat 1472.441 kb on - strandat 1472.441 kb on - strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.514 kb on + strandat 1472.515 kb on - strandat 1472.515 kb on - strandat 1472.515 kb on - strandat 1472.515 kb on - strandat 1472.515 kb on - strandat 1472.515 kb on - strandat 1472.515 kb on - strandat 1472.619 kb on + strand, within A4249_RS07385at 1472.619 kb on + strand, within A4249_RS07385at 1472.619 kb on + strand, within A4249_RS07385at 1472.620 kb on - strand, within A4249_RS07385at 1472.776 kb on + strand, within A4249_RS07385at 1472.776 kb on + strand, within A4249_RS07385at 1472.777 kb on - strand, within A4249_RS07385at 1472.777 kb on - strand, within A4249_RS07385at 1472.802 kb on + strand, within A4249_RS07385at 1472.803 kb on - strand, within A4249_RS07385at 1472.803 kb on - strand, within A4249_RS07385at 1473.016 kb on + strand, within A4249_RS07385at 1473.016 kb on + strand, within A4249_RS07385at 1473.016 kb on + strand, within A4249_RS07385at 1473.016 kb on + strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.017 kb on - strand, within A4249_RS07385at 1473.180 kb on + strand, within A4249_RS07385at 1473.180 kb on + strand, within A4249_RS07385at 1473.180 kb on + strand, within A4249_RS07385at 1473.181 kb on - strand, within A4249_RS07385at 1473.181 kb on - strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.223 kb on + strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.224 kb on - strand, within A4249_RS07385at 1473.225 kb on - strand, within A4249_RS07385at 1473.226 kb on + strand, within A4249_RS07385at 1473.227 kb on - strand, within A4249_RS07385at 1473.227 kb on - strand, within A4249_RS07385at 1473.227 kb on - strand, within A4249_RS07385at 1473.227 kb on - strand, within A4249_RS07385at 1473.239 kb on + strand, within A4249_RS07385at 1473.239 kb on + strand, within A4249_RS07385at 1473.239 kb on + strand, within A4249_RS07385at 1473.239 kb on + strand, within A4249_RS07385at 1473.240 kb on - strand, within A4249_RS07385at 1473.387 kb on + strand, within A4249_RS07385at 1474.099 kb on + strandat 1474.099 kb on + strandat 1474.100 kb on - strandat 1474.100 kb on - strandat 1474.100 kb on - strandat 1474.145 kb on + strandat 1474.146 kb on - strandat 1474.146 kb on - strandat 1474.146 kb on - strandat 1474.166 kb on + strandat 1474.167 kb on - strandat 1474.170 kb on + strandat 1474.170 kb on + strandat 1474.170 kb on + strandat 1474.170 kb on + strandat 1474.170 kb on + strandat 1474.171 kb on - strandat 1474.192 kb on + strandat 1474.193 kb on - strandat 1474.193 kb on - strandat 1474.472 kb on - strandat 1474.472 kb on - strandat 1474.472 kb on - strandat 1474.939 kb on + strand, within A4249_RS07390at 1474.939 kb on + strand, within A4249_RS07390at 1474.990 kb on + strand, within A4249_RS07390at 1475.029 kb on + strand, within A4249_RS07390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
remove
1,471,728 + A4249_RS07380 0.51 +0.2
1,471,729 - A4249_RS07380 0.51 +0.9
1,471,729 - A4249_RS07380 0.51 +1.5
1,472,028 + A4249_RS07380 0.90 +0.2
1,472,028 + A4249_RS07380 0.90 -0.3
1,472,028 + A4249_RS07380 0.90 +3.4
1,472,029 - -1.5
1,472,029 - -0.9
1,472,029 - +0.1
1,472,029 - +0.6
1,472,029 - -0.0
1,472,029 - +0.7
1,472,029 - +0.6
1,472,029 - +0.5
1,472,029 - +0.2
1,472,029 - +0.9
1,472,277 + +0.9
1,472,277 + -0.9
1,472,278 - -0.0
1,472,278 - -0.4
1,472,278 - -0.3
1,472,386 + -0.2
1,472,386 + -1.0
1,472,386 + -0.4
1,472,386 + -1.1
1,472,386 + +0.0
1,472,386 + -0.3
1,472,387 - +0.6
1,472,387 - +1.2
1,472,440 + -0.9
1,472,440 + -0.2
1,472,440 + -0.8
1,472,440 + -0.1
1,472,440 + -0.3
1,472,440 + +1.3
1,472,440 + +0.6
1,472,440 + -0.6
1,472,440 + -0.3
1,472,441 - +2.2
1,472,441 - +0.7
1,472,441 - +0.8
1,472,441 - -0.1
1,472,514 + -0.3
1,472,514 + +1.0
1,472,514 + -1.3
1,472,514 + -0.6
1,472,514 + +1.1
1,472,514 + +0.2
1,472,514 + -0.1
1,472,514 + +2.1
1,472,515 - -0.4
1,472,515 - -3.1
1,472,515 - -1.6
1,472,515 - -0.9
1,472,515 - -2.1
1,472,515 - -0.8
1,472,515 - -0.6
1,472,619 + A4249_RS07385 0.12 -0.3
1,472,619 + A4249_RS07385 0.12 +1.8
1,472,619 + A4249_RS07385 0.12 -0.9
1,472,620 - A4249_RS07385 0.12 -0.2
1,472,776 + A4249_RS07385 0.21 +1.8
1,472,776 + A4249_RS07385 0.21 -0.6
1,472,777 - A4249_RS07385 0.21 -0.4
1,472,777 - A4249_RS07385 0.21 -1.5
1,472,802 + A4249_RS07385 0.23 +1.2
1,472,803 - A4249_RS07385 0.23 -1.3
1,472,803 - A4249_RS07385 0.23 +0.0
1,473,016 + A4249_RS07385 0.35 -2.8
1,473,016 + A4249_RS07385 0.35 -0.6
1,473,016 + A4249_RS07385 0.35 -0.1
1,473,016 + A4249_RS07385 0.35 -0.2
1,473,017 - A4249_RS07385 0.35 -1.3
1,473,017 - A4249_RS07385 0.35 +0.6
1,473,017 - A4249_RS07385 0.35 -2.6
1,473,017 - A4249_RS07385 0.35 -1.9
1,473,017 - A4249_RS07385 0.35 +0.1
1,473,017 - A4249_RS07385 0.35 +0.2
1,473,017 - A4249_RS07385 0.35 -0.8
1,473,180 + A4249_RS07385 0.45 -0.6
1,473,180 + A4249_RS07385 0.45 +2.7
1,473,180 + A4249_RS07385 0.45 -1.0
1,473,181 - A4249_RS07385 0.45 +0.6
1,473,181 - A4249_RS07385 0.45 -0.6
1,473,223 + A4249_RS07385 0.47 -0.1
1,473,223 + A4249_RS07385 0.47 -1.3
1,473,223 + A4249_RS07385 0.47 -0.2
1,473,223 + A4249_RS07385 0.47 -1.1
1,473,223 + A4249_RS07385 0.47 +1.6
1,473,223 + A4249_RS07385 0.47 -1.2
1,473,223 + A4249_RS07385 0.47 +1.2
1,473,223 + A4249_RS07385 0.47 -0.3
1,473,223 + A4249_RS07385 0.47 +0.4
1,473,223 + A4249_RS07385 0.47 +1.7
1,473,223 + A4249_RS07385 0.47 +0.7
1,473,223 + A4249_RS07385 0.47 -0.2
1,473,223 + A4249_RS07385 0.47 +0.7
1,473,223 + A4249_RS07385 0.47 -1.6
1,473,223 + A4249_RS07385 0.47 +0.8
1,473,223 + A4249_RS07385 0.47 +0.8
1,473,223 + A4249_RS07385 0.47 +0.1
1,473,223 + A4249_RS07385 0.47 +0.3
1,473,223 + A4249_RS07385 0.47 -1.1
1,473,223 + A4249_RS07385 0.47 +0.1
1,473,223 + A4249_RS07385 0.47 -0.0
1,473,223 + A4249_RS07385 0.47 -0.6
1,473,224 - A4249_RS07385 0.47 +1.8
1,473,224 - A4249_RS07385 0.47 -0.8
1,473,224 - A4249_RS07385 0.47 +0.1
1,473,224 - A4249_RS07385 0.47 +0.4
1,473,224 - A4249_RS07385 0.47 +0.2
1,473,224 - A4249_RS07385 0.47 -0.3
1,473,224 - A4249_RS07385 0.47 -0.8
1,473,224 - A4249_RS07385 0.47 +0.8
1,473,224 - A4249_RS07385 0.47 -2.1
1,473,224 - A4249_RS07385 0.47 -0.3
1,473,224 - A4249_RS07385 0.47 +1.2
1,473,224 - A4249_RS07385 0.47 +0.9
1,473,224 - A4249_RS07385 0.47 -0.8
1,473,224 - A4249_RS07385 0.47 +0.2
1,473,224 - A4249_RS07385 0.47 -1.6
1,473,224 - A4249_RS07385 0.47 -0.8
1,473,224 - A4249_RS07385 0.47 +0.0
1,473,224 - A4249_RS07385 0.47 -0.4
1,473,224 - A4249_RS07385 0.47 -0.8
1,473,225 - A4249_RS07385 0.47 -0.5
1,473,226 + A4249_RS07385 0.47 -0.6
1,473,227 - A4249_RS07385 0.47 +0.2
1,473,227 - A4249_RS07385 0.47 +0.2
1,473,227 - A4249_RS07385 0.47 -0.2
1,473,227 - A4249_RS07385 0.47 -0.2
1,473,239 + A4249_RS07385 0.48 -0.6
1,473,239 + A4249_RS07385 0.48 -0.8
1,473,239 + A4249_RS07385 0.48 +0.2
1,473,239 + A4249_RS07385 0.48 +1.0
1,473,240 - A4249_RS07385 0.48 +0.1
1,473,387 + A4249_RS07385 0.57 +0.6
1,474,099 + -0.8
1,474,099 + -0.2
1,474,100 - +0.8
1,474,100 - +0.1
1,474,100 - -0.4
1,474,145 + -0.8
1,474,146 - -0.1
1,474,146 - -0.8
1,474,146 - +0.5
1,474,166 + +0.7
1,474,167 - -0.3
1,474,170 + -0.3
1,474,170 + +0.1
1,474,170 + +0.2
1,474,170 + +0.7
1,474,170 + +1.2
1,474,171 - -0.0
1,474,192 + -1.6
1,474,193 - -0.1
1,474,193 - +1.2
1,474,472 - -0.9
1,474,472 - -1.8
1,474,472 - -1.5
1,474,939 + A4249_RS07390 0.28 -1.3
1,474,939 + A4249_RS07390 0.28 -2.1
1,474,990 + A4249_RS07390 0.31 -0.8
1,475,029 + A4249_RS07390 0.32 -0.2

Or see this region's nucleotide sequence