Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04655

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04650 and A4249_RS16245 are separated by 31 nucleotidesA4249_RS16245 and A4249_RS04655 are separated by 103 nucleotidesA4249_RS04655 and A4249_RS04660 are separated by 104 nucleotidesA4249_RS04660 and A4249_RS04665 are separated by 36 nucleotides A4249_RS04650: A4249_RS04650 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 966,217 to 966,861 _RS04650 A4249_RS16245: A4249_RS16245 - OmpA family protein, at 966,893 to 967,597 _RS16245 A4249_RS04655: A4249_RS04655 - peptidoglycan DD-metalloendopeptidase family protein, at 967,701 to 968,780 _RS04655 A4249_RS04660: A4249_RS04660 - preprotein translocase subunit YajC, at 968,885 to 969,196 _RS04660 A4249_RS04665: A4249_RS04665 - protein translocase subunit SecD, at 969,233 to 970,825 _RS04665 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 966.966 kb on + strand, within A4249_RS16245at 966.966 kb on + strand, within A4249_RS16245at 966.967 kb on - strand, within A4249_RS16245at 966.990 kb on + strand, within A4249_RS16245at 966.990 kb on + strand, within A4249_RS16245at 967.004 kb on + strand, within A4249_RS16245at 967.005 kb on - strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.088 kb on + strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.089 kb on - strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.090 kb on + strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.091 kb on - strand, within A4249_RS16245at 967.102 kb on + strand, within A4249_RS16245at 967.135 kb on + strand, within A4249_RS16245at 967.135 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.170 kb on + strand, within A4249_RS16245at 967.171 kb on - strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.176 kb on + strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.177 kb on - strand, within A4249_RS16245at 967.187 kb on + strand, within A4249_RS16245at 967.187 kb on + strand, within A4249_RS16245at 967.188 kb on - strand, within A4249_RS16245at 967.188 kb on - strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.265 kb on + strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.266 kb on - strand, within A4249_RS16245at 967.335 kb on - strand, within A4249_RS16245at 967.346 kb on + strand, within A4249_RS16245at 967.346 kb on + strand, within A4249_RS16245at 967.346 kb on + strand, within A4249_RS16245at 967.346 kb on + strand, within A4249_RS16245at 967.346 kb on + strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.347 kb on - strand, within A4249_RS16245at 967.379 kb on + strand, within A4249_RS16245at 967.380 kb on - strand, within A4249_RS16245at 967.380 kb on - strand, within A4249_RS16245at 967.387 kb on + strand, within A4249_RS16245at 967.387 kb on + strand, within A4249_RS16245at 967.549 kb on + strandat 967.549 kb on + strandat 967.549 kb on + strandat 967.549 kb on + strandat 967.550 kb on - strandat 967.550 kb on - strandat 967.550 kb on - strandat 967.637 kb on + strandat 967.637 kb on + strandat 967.637 kb on + strandat 967.638 kb on - strandat 967.638 kb on - strandat 967.770 kb on + strandat 967.770 kb on + strandat 967.771 kb on - strandat 967.771 kb on - strandat 967.771 kb on - strandat 967.818 kb on + strand, within A4249_RS04655at 967.818 kb on + strand, within A4249_RS04655at 967.818 kb on + strand, within A4249_RS04655at 967.818 kb on + strand, within A4249_RS04655at 967.857 kb on + strand, within A4249_RS04655at 967.891 kb on - strand, within A4249_RS04655at 967.905 kb on + strand, within A4249_RS04655at 967.905 kb on + strand, within A4249_RS04655at 967.998 kb on + strand, within A4249_RS04655at 967.998 kb on + strand, within A4249_RS04655at 967.999 kb on - strand, within A4249_RS04655at 967.999 kb on - strand, within A4249_RS04655at 968.028 kb on + strand, within A4249_RS04655at 968.028 kb on + strand, within A4249_RS04655at 968.030 kb on + strand, within A4249_RS04655at 968.031 kb on - strand, within A4249_RS04655at 968.044 kb on - strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.084 kb on + strand, within A4249_RS04655at 968.084 kb on + strand, within A4249_RS04655at 968.084 kb on + strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.245 kb on - strand, within A4249_RS04655at 968.532 kb on + strand, within A4249_RS04655at 968.532 kb on + strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.604 kb on + strand, within A4249_RS04655at 968.604 kb on + strand, within A4249_RS04655at 968.604 kb on + strand, within A4249_RS04655at 968.674 kb on + strandat 968.674 kb on + strandat 968.674 kb on + strandat 968.675 kb on - strandat 968.675 kb on - strandat 968.778 kb on + strandat 968.778 kb on + strandat 968.779 kb on - strandat 968.779 kb on - strandat 968.779 kb on - strandat 969.197 kb on + strandat 969.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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966,966 + A4249_RS16245 0.10 -0.9
966,966 + A4249_RS16245 0.10 +0.2
966,967 - A4249_RS16245 0.10 -0.8
966,990 + A4249_RS16245 0.14 -0.3
966,990 + A4249_RS16245 0.14 +1.0
967,004 + A4249_RS16245 0.16 -0.8
967,005 - A4249_RS16245 0.16 +1.4
967,088 + A4249_RS16245 0.28 +0.1
967,088 + A4249_RS16245 0.28 -1.8
967,088 + A4249_RS16245 0.28 +1.2
967,088 + A4249_RS16245 0.28 +0.2
967,089 - A4249_RS16245 0.28 -0.8
967,089 - A4249_RS16245 0.28 -0.8
967,089 - A4249_RS16245 0.28 +0.4
967,089 - A4249_RS16245 0.28 -0.2
967,089 - A4249_RS16245 0.28 -0.3
967,089 - A4249_RS16245 0.28 -0.8
967,090 + A4249_RS16245 0.28 -0.6
967,090 + A4249_RS16245 0.28 -0.0
967,090 + A4249_RS16245 0.28 +0.4
967,090 + A4249_RS16245 0.28 +1.7
967,090 + A4249_RS16245 0.28 -2.5
967,090 + A4249_RS16245 0.28 +0.2
967,090 + A4249_RS16245 0.28 -1.2
967,091 - A4249_RS16245 0.28 +0.2
967,091 - A4249_RS16245 0.28 -0.1
967,091 - A4249_RS16245 0.28 +0.2
967,091 - A4249_RS16245 0.28 -0.4
967,091 - A4249_RS16245 0.28 +0.3
967,091 - A4249_RS16245 0.28 -0.3
967,102 + A4249_RS16245 0.30 -0.8
967,135 + A4249_RS16245 0.34 +0.3
967,135 + A4249_RS16245 0.34 -0.1
967,170 + A4249_RS16245 0.39 -0.8
967,170 + A4249_RS16245 0.39 +1.0
967,170 + A4249_RS16245 0.39 +0.5
967,170 + A4249_RS16245 0.39 +1.2
967,171 - A4249_RS16245 0.39 -3.6
967,176 + A4249_RS16245 0.40 +0.2
967,176 + A4249_RS16245 0.40 +0.3
967,176 + A4249_RS16245 0.40 +2.2
967,176 + A4249_RS16245 0.40 -0.2
967,177 - A4249_RS16245 0.40 -1.0
967,177 - A4249_RS16245 0.40 -0.5
967,177 - A4249_RS16245 0.40 +0.2
967,177 - A4249_RS16245 0.40 -1.7
967,187 + A4249_RS16245 0.42 -0.4
967,187 + A4249_RS16245 0.42 -1.0
967,188 - A4249_RS16245 0.42 +0.2
967,188 - A4249_RS16245 0.42 -3.2
967,265 + A4249_RS16245 0.53 -0.8
967,265 + A4249_RS16245 0.53 +1.2
967,265 + A4249_RS16245 0.53 +1.2
967,265 + A4249_RS16245 0.53 +1.9
967,265 + A4249_RS16245 0.53 +0.7
967,265 + A4249_RS16245 0.53 +0.2
967,265 + A4249_RS16245 0.53 -0.3
967,266 - A4249_RS16245 0.53 +1.0
967,266 - A4249_RS16245 0.53 -0.7
967,266 - A4249_RS16245 0.53 +0.2
967,266 - A4249_RS16245 0.53 +0.2
967,266 - A4249_RS16245 0.53 -0.3
967,266 - A4249_RS16245 0.53 -0.1
967,266 - A4249_RS16245 0.53 +2.1
967,335 - A4249_RS16245 0.63 -0.7
967,346 + A4249_RS16245 0.64 +1.3
967,346 + A4249_RS16245 0.64 +0.3
967,346 + A4249_RS16245 0.64 +0.6
967,346 + A4249_RS16245 0.64 -2.4
967,346 + A4249_RS16245 0.64 +2.7
967,347 - A4249_RS16245 0.64 +0.3
967,347 - A4249_RS16245 0.64 -0.2
967,347 - A4249_RS16245 0.64 +0.5
967,347 - A4249_RS16245 0.64 -1.8
967,347 - A4249_RS16245 0.64 +0.8
967,347 - A4249_RS16245 0.64 -0.7
967,347 - A4249_RS16245 0.64 -0.1
967,379 + A4249_RS16245 0.69 +0.7
967,380 - A4249_RS16245 0.69 +0.2
967,380 - A4249_RS16245 0.69 +0.2
967,387 + A4249_RS16245 0.70 +0.2
967,387 + A4249_RS16245 0.70 -1.3
967,549 + +0.2
967,549 + +0.1
967,549 + -0.5
967,549 + +0.9
967,550 - +0.3
967,550 - -0.1
967,550 - +0.4
967,637 + +0.2
967,637 + -0.6
967,637 + -1.0
967,638 - -1.0
967,638 - +0.7
967,770 + -3.4
967,770 + -0.7
967,771 - -0.3
967,771 - -0.8
967,771 - -0.6
967,818 + A4249_RS04655 0.11 -0.6
967,818 + A4249_RS04655 0.11 -0.8
967,818 + A4249_RS04655 0.11 -0.4
967,818 + A4249_RS04655 0.11 -2.2
967,857 + A4249_RS04655 0.14 -1.3
967,891 - A4249_RS04655 0.18 +0.2
967,905 + A4249_RS04655 0.19 -1.2
967,905 + A4249_RS04655 0.19 +0.2
967,998 + A4249_RS04655 0.28 +0.2
967,998 + A4249_RS04655 0.28 -1.6
967,999 - A4249_RS04655 0.28 -2.2
967,999 - A4249_RS04655 0.28 -0.8
968,028 + A4249_RS04655 0.30 -0.8
968,028 + A4249_RS04655 0.30 -1.3
968,030 + A4249_RS04655 0.30 +0.2
968,031 - A4249_RS04655 0.31 -1.6
968,044 - A4249_RS04655 0.32 -0.8
968,082 + A4249_RS04655 0.35 -3.3
968,082 + A4249_RS04655 0.35 -2.4
968,082 + A4249_RS04655 0.35 -2.7
968,082 + A4249_RS04655 0.35 +0.2
968,083 - A4249_RS04655 0.35 -1.1
968,083 - A4249_RS04655 0.35 +0.2
968,083 - A4249_RS04655 0.35 -1.8
968,083 - A4249_RS04655 0.35 -0.8
968,084 + A4249_RS04655 0.35 -0.3
968,084 + A4249_RS04655 0.35 +0.2
968,084 + A4249_RS04655 0.35 -0.8
968,085 - A4249_RS04655 0.36 -1.4
968,085 - A4249_RS04655 0.36 -0.8
968,085 - A4249_RS04655 0.36 -0.8
968,085 - A4249_RS04655 0.36 -1.0
968,245 - A4249_RS04655 0.50 +0.7
968,532 + A4249_RS04655 0.77 +1.2
968,532 + A4249_RS04655 0.77 -1.2
968,533 - A4249_RS04655 0.77 -0.4
968,533 - A4249_RS04655 0.77 -1.1
968,533 - A4249_RS04655 0.77 -2.1
968,533 - A4249_RS04655 0.77 -2.2
968,604 + A4249_RS04655 0.84 -0.6
968,604 + A4249_RS04655 0.84 -1.2
968,604 + A4249_RS04655 0.84 -0.2
968,674 + -0.3
968,674 + -0.3
968,674 + -0.8
968,675 - -1.8
968,675 - -0.8
968,778 + -0.9
968,778 + +0.9
968,779 - -1.8
968,779 - -2.1
968,779 - +1.2
969,197 + -1.2
969,217 + +2.5

Or see this region's nucleotide sequence