Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04460 and A4249_RS04465 are separated by 67 nucleotides A4249_RS04465 and A4249_RS04470 overlap by 4 nucleotides A4249_RS04470 and A4249_RS04475 overlap by 11 nucleotides A4249_RS04475 and A4249_RS04480 overlap by 4 nucleotides
A4249_RS04460: A4249_RS04460 - cytochrome o ubiquinol oxidase subunit IV, at 928,265 to 928,648
_RS04460
A4249_RS04465: A4249_RS04465 - SURF1 family protein, at 928,716 to 929,414
_RS04465
A4249_RS04470: A4249_RS04470 - ATP-binding protein, at 929,411 to 930,742
_RS04470
A4249_RS04475: A4249_RS04475 - response regulator transcription factor, at 930,732 to 931,268
_RS04475
A4249_RS04480: A4249_RS04480 - HIT family protein, at 931,265 to 931,702
_RS04480
Position (kb) 929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 928.481 kb on + strand, within A4249_RS04460 at 928.481 kb on + strand, within A4249_RS04460 at 928.481 kb on + strand, within A4249_RS04460 at 928.589 kb on + strand, within A4249_RS04460 at 928.589 kb on + strand, within A4249_RS04460 at 928.589 kb on + strand, within A4249_RS04460 at 929.239 kb on - strand, within A4249_RS04465 at 929.239 kb on - strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.428 kb on - strand at 929.428 kb on - strand at 929.564 kb on + strand, within A4249_RS04470 at 929.564 kb on + strand, within A4249_RS04470 at 929.564 kb on + strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.771 kb on + strand, within A4249_RS04470 at 929.771 kb on + strand, within A4249_RS04470 at 929.771 kb on + strand, within A4249_RS04470 at 929.771 kb on + strand, within A4249_RS04470 at 929.772 kb on - strand, within A4249_RS04470 at 929.772 kb on - strand, within A4249_RS04470 at 929.772 kb on - strand, within A4249_RS04470 at 929.772 kb on - strand, within A4249_RS04470 at 929.772 kb on - strand, within A4249_RS04470 at 929.816 kb on + strand, within A4249_RS04470 at 929.816 kb on + strand, within A4249_RS04470 at 929.816 kb on + strand, within A4249_RS04470 at 929.816 kb on + strand, within A4249_RS04470 at 929.816 kb on + strand, within A4249_RS04470 at 929.816 kb on + strand, within A4249_RS04470 at 929.817 kb on - strand, within A4249_RS04470 at 929.817 kb on - strand, within A4249_RS04470 at 929.817 kb on - strand, within A4249_RS04470 at 929.924 kb on + strand, within A4249_RS04470 at 929.924 kb on + strand, within A4249_RS04470 at 929.924 kb on + strand, within A4249_RS04470 at 929.925 kb on - strand, within A4249_RS04470 at 929.925 kb on - strand, within A4249_RS04470 at 930.061 kb on + strand, within A4249_RS04470 at 930.061 kb on + strand, within A4249_RS04470 at 930.061 kb on + strand, within A4249_RS04470 at 930.061 kb on + strand, within A4249_RS04470 at 930.061 kb on + strand, within A4249_RS04470 at 930.062 kb on - strand, within A4249_RS04470 at 930.062 kb on - strand, within A4249_RS04470 at 930.062 kb on - strand, within A4249_RS04470 at 930.062 kb on - strand, within A4249_RS04470 at 930.062 kb on - strand, within A4249_RS04470 at 930.062 kb on - strand, within A4249_RS04470 at 930.563 kb on + strand, within A4249_RS04470 at 930.563 kb on + strand, within A4249_RS04470 at 930.563 kb on + strand, within A4249_RS04470 at 930.563 kb on + strand, within A4249_RS04470 at 930.564 kb on - strand, within A4249_RS04470 at 930.564 kb on - strand, within A4249_RS04470 at 930.564 kb on - strand, within A4249_RS04470 at 930.609 kb on + strand at 930.610 kb on - strand at 930.610 kb on - strand at 930.613 kb on + strand at 930.613 kb on + strand at 930.613 kb on + strand at 930.613 kb on + strand at 930.614 kb on - strand at 930.614 kb on - strand at 930.614 kb on - strand at 930.645 kb on + strand at 930.645 kb on + strand at 930.645 kb on + strand at 930.646 kb on - strand at 930.646 kb on - strand at 930.819 kb on + strand, within A4249_RS04475 at 930.819 kb on + strand, within A4249_RS04475 at 930.819 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.968 kb on + strand, within A4249_RS04475 at 931.038 kb on + strand, within A4249_RS04475 at 931.039 kb on - strand, within A4249_RS04475 at 931.039 kb on - strand, within A4249_RS04475 at 931.266 kb on + strand at 931.266 kb on + strand at 931.266 kb on + strand at 931.267 kb on - strand at 931.267 kb on - strand at 931.267 kb on - strand at 931.267 kb on - strand at 931.316 kb on - strand, within A4249_RS04480 at 931.534 kb on + strand, within A4249_RS04480 at 931.534 kb on + strand, within A4249_RS04480 at 931.683 kb on + strand at 931.683 kb on + strand at 931.683 kb on + strand at 931.684 kb on - strand at 931.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 928,481 + A4249_RS04460 0.56 -1.0 928,481 + A4249_RS04460 0.56 -0.4 928,481 + A4249_RS04460 0.56 +2.2 928,589 + A4249_RS04460 0.84 -0.9 928,589 + A4249_RS04460 0.84 -0.5 928,589 + A4249_RS04460 0.84 -0.0 929,239 - A4249_RS04465 0.75 -0.1 929,239 - A4249_RS04465 0.75 +1.5 929,328 + A4249_RS04465 0.88 +0.7 929,328 + A4249_RS04465 0.88 -0.3 929,328 + A4249_RS04465 0.88 -0.3 929,328 + A4249_RS04465 0.88 +2.1 929,329 - A4249_RS04465 0.88 +1.0 929,329 - A4249_RS04465 0.88 +1.3 929,329 - A4249_RS04465 0.88 +0.9 929,329 - A4249_RS04465 0.88 +0.3 929,427 + -0.4 929,427 + -0.8 929,427 + +0.8 929,427 + -3.2 929,427 + -0.1 929,427 + -0.0 929,427 + +1.3 929,427 + -0.9 929,427 + +0.2 929,427 + +3.2 929,428 - +1.1 929,428 - -0.1 929,564 + A4249_RS04470 0.11 -0.8 929,564 + A4249_RS04470 0.11 +0.6 929,564 + A4249_RS04470 0.11 +0.4 929,565 - A4249_RS04470 0.12 +0.6 929,565 - A4249_RS04470 0.12 +1.3 929,565 - A4249_RS04470 0.12 +2.0 929,565 - A4249_RS04470 0.12 -0.4 929,565 - A4249_RS04470 0.12 +1.2 929,771 + A4249_RS04470 0.27 +1.0 929,771 + A4249_RS04470 0.27 +0.8 929,771 + A4249_RS04470 0.27 +1.0 929,771 + A4249_RS04470 0.27 -1.3 929,772 - A4249_RS04470 0.27 +2.8 929,772 - A4249_RS04470 0.27 -0.2 929,772 - A4249_RS04470 0.27 -0.2 929,772 - A4249_RS04470 0.27 +0.8 929,772 - A4249_RS04470 0.27 +1.2 929,816 + A4249_RS04470 0.30 +1.1 929,816 + A4249_RS04470 0.30 +0.5 929,816 + A4249_RS04470 0.30 +0.8 929,816 + A4249_RS04470 0.30 +0.9 929,816 + A4249_RS04470 0.30 -0.8 929,816 + A4249_RS04470 0.30 -0.9 929,817 - A4249_RS04470 0.30 +2.5 929,817 - A4249_RS04470 0.30 -0.8 929,817 - A4249_RS04470 0.30 +0.6 929,924 + A4249_RS04470 0.39 +0.8 929,924 + A4249_RS04470 0.39 -0.4 929,924 + A4249_RS04470 0.39 +0.5 929,925 - A4249_RS04470 0.39 +0.7 929,925 - A4249_RS04470 0.39 -0.1 930,061 + A4249_RS04470 0.49 +0.9 930,061 + A4249_RS04470 0.49 +0.1 930,061 + A4249_RS04470 0.49 -0.8 930,061 + A4249_RS04470 0.49 -0.7 930,061 + A4249_RS04470 0.49 -0.9 930,062 - A4249_RS04470 0.49 -0.3 930,062 - A4249_RS04470 0.49 +0.2 930,062 - A4249_RS04470 0.49 +1.3 930,062 - A4249_RS04470 0.49 +1.2 930,062 - A4249_RS04470 0.49 -0.5 930,062 - A4249_RS04470 0.49 +0.6 930,563 + A4249_RS04470 0.86 +1.3 930,563 + A4249_RS04470 0.86 +0.8 930,563 + A4249_RS04470 0.86 -0.9 930,563 + A4249_RS04470 0.86 +0.5 930,564 - A4249_RS04470 0.87 +0.7 930,564 - A4249_RS04470 0.87 +0.2 930,564 - A4249_RS04470 0.87 +0.5 930,609 + -0.2 930,610 - +1.9 930,610 - +1.8 930,613 + +0.8 930,613 + +0.4 930,613 + +0.9 930,613 + -0.7 930,614 - -0.0 930,614 - -0.2 930,614 - +0.7 930,645 + -0.6 930,645 + +0.2 930,645 + +0.2 930,646 - +0.8 930,646 - -0.8 930,819 + A4249_RS04475 0.16 -0.6 930,819 + A4249_RS04475 0.16 -0.8 930,819 + A4249_RS04475 0.16 -0.2 930,821 + A4249_RS04475 0.17 -0.8 930,821 + A4249_RS04475 0.17 -0.8 930,821 + A4249_RS04475 0.17 -1.8 930,821 + A4249_RS04475 0.17 -1.8 930,968 + A4249_RS04475 0.44 +0.2 931,038 + A4249_RS04475 0.57 -3.3 931,039 - A4249_RS04475 0.57 +0.2 931,039 - A4249_RS04475 0.57 -1.4 931,266 + +2.2 931,266 + +0.5 931,266 + +0.3 931,267 - +0.9 931,267 - -0.2 931,267 - -0.2 931,267 - +0.3 931,316 - A4249_RS04480 0.12 -0.2 931,534 + A4249_RS04480 0.61 -1.2 931,534 + A4249_RS04480 0.61 -4.6 931,683 + +2.3 931,683 + +1.2 931,683 + +0.2 931,684 - -0.4 931,734 - -1.5
Or see this region's nucleotide sequence