Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04450 and A4249_RS04455 are separated by 2 nucleotides A4249_RS04455 and A4249_RS04460 are separated by 8 nucleotides A4249_RS04460 and A4249_RS04465 are separated by 67 nucleotides A4249_RS04465 and A4249_RS04470 overlap by 4 nucleotides
A4249_RS04450: A4249_RS04450 - cytochrome o ubiquinol oxidase subunit I, at 925,627 to 927,630
_RS04450
A4249_RS04455: A4249_RS04455 - cytochrome o ubiquinol oxidase subunit III, at 927,633 to 928,256
_RS04455
A4249_RS04460: A4249_RS04460 - cytochrome o ubiquinol oxidase subunit IV, at 928,265 to 928,648
_RS04460
A4249_RS04465: A4249_RS04465 - SURF1 family protein, at 928,716 to 929,414
_RS04465
A4249_RS04470: A4249_RS04470 - ATP-binding protein, at 929,411 to 930,742
_RS04470
Position (kb) 928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.301 kb on + strand, within A4249_RS04450 at 927.322 kb on + strand, within A4249_RS04450 at 927.322 kb on + strand, within A4249_RS04450 at 927.322 kb on + strand, within A4249_RS04450 at 927.475 kb on + strand at 927.534 kb on + strand at 927.534 kb on + strand at 927.534 kb on + strand at 927.534 kb on + strand at 927.534 kb on + strand at 927.534 kb on + strand at 927.544 kb on + strand at 927.544 kb on + strand at 927.556 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.559 kb on + strand at 927.732 kb on + strand, within A4249_RS04455 at 927.798 kb on + strand, within A4249_RS04455 at 927.885 kb on + strand, within A4249_RS04455 at 927.885 kb on + strand, within A4249_RS04455 at 928.233 kb on + strand at 928.233 kb on + strand at 928.233 kb on + strand at 928.343 kb on + strand, within A4249_RS04460 at 928.343 kb on + strand, within A4249_RS04460 at 928.343 kb on + strand, within A4249_RS04460 at 928.343 kb on + strand, within A4249_RS04460 at 928.481 kb on + strand, within A4249_RS04460 at 928.481 kb on + strand, within A4249_RS04460 at 928.481 kb on + strand, within A4249_RS04460 at 928.589 kb on + strand, within A4249_RS04460 at 928.589 kb on + strand, within A4249_RS04460 at 928.589 kb on + strand, within A4249_RS04460 at 929.239 kb on - strand, within A4249_RS04465 at 929.239 kb on - strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.328 kb on + strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.329 kb on - strand, within A4249_RS04465 at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.428 kb on - strand at 929.428 kb on - strand at 929.564 kb on + strand, within A4249_RS04470 at 929.564 kb on + strand, within A4249_RS04470 at 929.564 kb on + strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470 at 929.565 kb on - strand, within A4249_RS04470
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 927,301 + A4249_RS04450 0.84 +0.9 927,322 + A4249_RS04450 0.85 -0.4 927,322 + A4249_RS04450 0.85 -1.8 927,322 + A4249_RS04450 0.85 +0.4 927,475 + +0.2 927,534 + -0.3 927,534 + +0.2 927,534 + +1.4 927,534 + +0.6 927,534 + -0.4 927,534 + +0.6 927,544 + +0.2 927,544 + +1.1 927,556 + -0.4 927,559 + -3.1 927,559 + +0.2 927,559 + -0.5 927,559 + +1.5 927,559 + -0.2 927,559 + +1.2 927,559 + -0.8 927,559 + -1.4 927,559 + +0.3 927,732 + A4249_RS04455 0.16 -1.1 927,798 + A4249_RS04455 0.26 +0.2 927,885 + A4249_RS04455 0.40 -0.5 927,885 + A4249_RS04455 0.40 -0.4 928,233 + +0.9 928,233 + +0.2 928,233 + +0.5 928,343 + A4249_RS04460 0.20 -0.2 928,343 + A4249_RS04460 0.20 -1.8 928,343 + A4249_RS04460 0.20 -1.1 928,343 + A4249_RS04460 0.20 -0.2 928,481 + A4249_RS04460 0.56 -1.0 928,481 + A4249_RS04460 0.56 -0.4 928,481 + A4249_RS04460 0.56 +2.2 928,589 + A4249_RS04460 0.84 -0.9 928,589 + A4249_RS04460 0.84 -0.5 928,589 + A4249_RS04460 0.84 -0.0 929,239 - A4249_RS04465 0.75 -0.1 929,239 - A4249_RS04465 0.75 +1.5 929,328 + A4249_RS04465 0.88 +0.7 929,328 + A4249_RS04465 0.88 -0.3 929,328 + A4249_RS04465 0.88 -0.3 929,328 + A4249_RS04465 0.88 +2.1 929,329 - A4249_RS04465 0.88 +1.0 929,329 - A4249_RS04465 0.88 +1.3 929,329 - A4249_RS04465 0.88 +0.9 929,329 - A4249_RS04465 0.88 +0.3 929,427 + -0.4 929,427 + -0.8 929,427 + +0.8 929,427 + -3.2 929,427 + -0.1 929,427 + -0.0 929,427 + +1.3 929,427 + -0.9 929,427 + +0.2 929,427 + +3.2 929,428 - +1.1 929,428 - -0.1 929,564 + A4249_RS04470 0.11 -0.8 929,564 + A4249_RS04470 0.11 +0.6 929,564 + A4249_RS04470 0.11 +0.4 929,565 - A4249_RS04470 0.12 +0.6 929,565 - A4249_RS04470 0.12 +1.3 929,565 - A4249_RS04470 0.12 +2.0 929,565 - A4249_RS04470 0.12 -0.4 929,565 - A4249_RS04470 0.12 +1.2
Or see this region's nucleotide sequence