Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02765 and A4249_RS02770 overlap by 1 nucleotides A4249_RS02770 and A4249_RS02775 are separated by 168 nucleotides A4249_RS02775 and A4249_RS02780 are separated by 118 nucleotides
A4249_RS02765: A4249_RS02765 - hypothetical protein, at 587,231 to 587,902
_RS02765
A4249_RS02770: A4249_RS02770 - hypothetical protein, at 587,902 to 588,324
_RS02770
A4249_RS02775: A4249_RS02775 - single-stranded DNA-binding protein, at 588,493 to 588,990
_RS02775
A4249_RS02780: A4249_RS02780 - DMT family transporter, at 589,109 to 590,047
_RS02780
Position (kb) 588
589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.502 kb on + strand, within A4249_RS02765 at 587.502 kb on + strand, within A4249_RS02765 at 587.741 kb on + strand, within A4249_RS02765 at 587.741 kb on + strand, within A4249_RS02765 at 587.742 kb on - strand, within A4249_RS02765 at 587.777 kb on + strand, within A4249_RS02765 at 587.778 kb on - strand, within A4249_RS02765 at 587.971 kb on + strand, within A4249_RS02770 at 587.971 kb on + strand, within A4249_RS02770 at 587.971 kb on + strand, within A4249_RS02770 at 587.972 kb on - strand, within A4249_RS02770 at 587.972 kb on - strand, within A4249_RS02770 at 587.972 kb on - strand, within A4249_RS02770 at 587.972 kb on - strand, within A4249_RS02770 at 587.995 kb on + strand, within A4249_RS02770 at 587.995 kb on + strand, within A4249_RS02770 at 587.996 kb on - strand, within A4249_RS02770 at 587.996 kb on - strand, within A4249_RS02770 at 587.996 kb on - strand, within A4249_RS02770 at 587.996 kb on - strand, within A4249_RS02770 at 588.145 kb on + strand, within A4249_RS02770 at 588.145 kb on + strand, within A4249_RS02770 at 588.299 kb on + strand at 588.299 kb on + strand at 588.299 kb on + strand at 588.299 kb on + strand at 588.299 kb on + strand at 588.299 kb on + strand at 588.299 kb on + strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.300 kb on - strand at 588.322 kb on + strand at 588.322 kb on + strand at 588.322 kb on + strand at 588.322 kb on + strand at 588.323 kb on - strand at 588.323 kb on - strand at 588.323 kb on - strand at 588.325 kb on - strand at 588.988 kb on + strand at 588.988 kb on + strand at 588.988 kb on + strand at 588.989 kb on - strand at 588.989 kb on - strand at 589.099 kb on + strand at 589.100 kb on - strand at 589.388 kb on + strand, within A4249_RS02780 at 589.400 kb on + strand, within A4249_RS02780 at 589.400 kb on + strand, within A4249_RS02780 at 589.401 kb on - strand, within A4249_RS02780 at 589.409 kb on + strand, within A4249_RS02780 at 589.827 kb on + strand, within A4249_RS02780 at 589.886 kb on + strand, within A4249_RS02780 at 589.886 kb on + strand, within A4249_RS02780 at 589.887 kb on - strand, within A4249_RS02780 at 589.887 kb on - strand, within A4249_RS02780 at 589.887 kb on - strand, within A4249_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 587,502 + A4249_RS02765 0.40 -1.0 587,502 + A4249_RS02765 0.40 -0.7 587,741 + A4249_RS02765 0.76 -0.3 587,741 + A4249_RS02765 0.76 -0.7 587,742 - A4249_RS02765 0.76 +0.3 587,777 + A4249_RS02765 0.81 +0.3 587,778 - A4249_RS02765 0.81 -0.4 587,971 + A4249_RS02770 0.16 +0.2 587,971 + A4249_RS02770 0.16 +0.3 587,971 + A4249_RS02770 0.16 +0.4 587,972 - A4249_RS02770 0.17 +0.1 587,972 - A4249_RS02770 0.17 +0.4 587,972 - A4249_RS02770 0.17 -0.3 587,972 - A4249_RS02770 0.17 +0.0 587,995 + A4249_RS02770 0.22 -0.0 587,995 + A4249_RS02770 0.22 +0.4 587,996 - A4249_RS02770 0.22 +0.1 587,996 - A4249_RS02770 0.22 +0.1 587,996 - A4249_RS02770 0.22 +1.1 587,996 - A4249_RS02770 0.22 +0.6 588,145 + A4249_RS02770 0.57 -0.3 588,145 + A4249_RS02770 0.57 +0.4 588,299 + +0.3 588,299 + -0.2 588,299 + +0.3 588,299 + +0.7 588,299 + -1.7 588,299 + +0.1 588,299 + -0.4 588,300 - +1.6 588,300 - -0.1 588,300 - +2.6 588,300 - +0.9 588,300 - -0.6 588,300 - -0.3 588,300 - -0.7 588,300 - +0.3 588,300 - -2.2 588,322 + -0.2 588,322 + -0.5 588,322 + -0.4 588,322 + +1.1 588,323 - +0.7 588,323 - -1.9 588,323 - -0.5 588,325 - +0.0 588,988 + +0.1 588,988 + +0.3 588,988 + -0.2 588,989 - +0.3 588,989 - +1.5 589,099 + -0.0 589,100 - -0.6 589,388 + A4249_RS02780 0.30 -0.1 589,400 + A4249_RS02780 0.31 +1.3 589,400 + A4249_RS02780 0.31 -0.4 589,401 - A4249_RS02780 0.31 -1.7 589,409 + A4249_RS02780 0.32 +2.3 589,827 + A4249_RS02780 0.76 +1.3 589,886 + A4249_RS02780 0.83 +0.6 589,886 + A4249_RS02780 0.83 -0.9 589,887 - A4249_RS02780 0.83 +0.9 589,887 - A4249_RS02780 0.83 -0.7 589,887 - A4249_RS02780 0.83 -1.8
Or see this region's nucleotide sequence