Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00255 and A4249_RS00260 are separated by 23 nucleotides A4249_RS00260 and A4249_RS00265 are separated by 129 nucleotides A4249_RS00265 and A4249_RS00270 are separated by 90 nucleotides A4249_RS00270 and A4249_RS00275 overlap by 25 nucleotides
A4249_RS00255: A4249_RS00255 - outer membrane beta-barrel protein, at 43,978 to 44,829
_RS00255
A4249_RS00260: A4249_RS00260 - YqgE/AlgH family protein, at 44,853 to 45,422
_RS00260
A4249_RS00265: A4249_RS00265 - peroxiredoxin, at 45,552 to 46,037
_RS00265
A4249_RS00270: A4249_RS00270 - very short patch repair endonuclease, at 46,128 to 46,517
_RS00270
A4249_RS00275: A4249_RS00275 - ATP-binding protein, at 46,493 to 48,364
_RS00275
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.571 kb on + strand, within A4249_RS00255 at 44.571 kb on + strand, within A4249_RS00255 at 44.620 kb on + strand, within A4249_RS00255 at 44.621 kb on - strand, within A4249_RS00255 at 44.621 kb on - strand, within A4249_RS00255 at 44.621 kb on - strand, within A4249_RS00255 at 44.621 kb on - strand, within A4249_RS00255 at 44.621 kb on - strand, within A4249_RS00255 at 44.621 kb on - strand, within A4249_RS00255 at 44.656 kb on + strand, within A4249_RS00255 at 44.656 kb on + strand, within A4249_RS00255 at 44.656 kb on + strand, within A4249_RS00255 at 44.656 kb on + strand, within A4249_RS00255 at 44.657 kb on - strand, within A4249_RS00255 at 44.657 kb on - strand, within A4249_RS00255 at 44.657 kb on - strand, within A4249_RS00255 at 44.662 kb on + strand, within A4249_RS00255 at 44.662 kb on + strand, within A4249_RS00255 at 44.662 kb on + strand, within A4249_RS00255 at 44.662 kb on + strand, within A4249_RS00255 at 44.663 kb on - strand, within A4249_RS00255 at 44.663 kb on - strand, within A4249_RS00255 at 44.663 kb on - strand, within A4249_RS00255 at 44.818 kb on + strand at 44.818 kb on + strand at 44.819 kb on - strand at 44.819 kb on - strand at 44.819 kb on - strand at 45.161 kb on + strand, within A4249_RS00260 at 45.162 kb on - strand, within A4249_RS00260 at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.496 kb on + strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.497 kb on - strand at 45.762 kb on - strand, within A4249_RS00265 at 45.937 kb on - strand, within A4249_RS00265 at 46.035 kb on + strand at 46.035 kb on + strand at 46.035 kb on + strand at 46.036 kb on - strand at 46.036 kb on - strand at 46.036 kb on - strand at 46.036 kb on - strand at 46.036 kb on - strand at 46.066 kb on + strand at 46.067 kb on - strand at 46.067 kb on - strand at 46.426 kb on + strand, within A4249_RS00270 at 46.426 kb on + strand, within A4249_RS00270 at 46.427 kb on - strand, within A4249_RS00270 at 46.590 kb on + strand at 46.590 kb on + strand at 46.590 kb on + strand at 46.590 kb on + strand at 46.590 kb on + strand at 46.590 kb on + strand at 46.591 kb on - strand at 46.859 kb on - strand, within A4249_RS00275 at 46.859 kb on - strand, within A4249_RS00275 at 46.859 kb on - strand, within A4249_RS00275
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 44,571 + A4249_RS00255 0.70 -0.4 44,571 + A4249_RS00255 0.70 +0.3 44,620 + A4249_RS00255 0.75 +0.2 44,621 - A4249_RS00255 0.75 +2.7 44,621 - A4249_RS00255 0.75 -0.3 44,621 - A4249_RS00255 0.75 +0.1 44,621 - A4249_RS00255 0.75 +0.9 44,621 - A4249_RS00255 0.75 -1.6 44,621 - A4249_RS00255 0.75 +0.3 44,656 + A4249_RS00255 0.80 +1.9 44,656 + A4249_RS00255 0.80 -0.3 44,656 + A4249_RS00255 0.80 +0.4 44,656 + A4249_RS00255 0.80 -0.9 44,657 - A4249_RS00255 0.80 -0.6 44,657 - A4249_RS00255 0.80 +0.1 44,657 - A4249_RS00255 0.80 -0.2 44,662 + A4249_RS00255 0.80 -0.2 44,662 + A4249_RS00255 0.80 +0.1 44,662 + A4249_RS00255 0.80 +0.4 44,662 + A4249_RS00255 0.80 -1.6 44,663 - A4249_RS00255 0.80 +0.3 44,663 - A4249_RS00255 0.80 -1.2 44,663 - A4249_RS00255 0.80 +1.9 44,818 + -0.2 44,818 + -0.6 44,819 - +0.4 44,819 - +0.2 44,819 - +0.1 45,161 + A4249_RS00260 0.54 +0.1 45,162 - A4249_RS00260 0.54 +0.6 45,496 + +0.5 45,496 + -1.0 45,496 + -0.1 45,496 + +1.0 45,496 + -1.4 45,496 + -3.4 45,496 + -1.2 45,496 + -0.1 45,496 + -0.2 45,496 + -0.2 45,496 + +1.4 45,496 + +0.4 45,496 + +0.3 45,496 + +0.3 45,496 + +0.7 45,496 + -0.2 45,496 + +1.4 45,496 + +0.7 45,497 - +0.2 45,497 - +0.1 45,497 - +0.4 45,497 - -1.5 45,497 - -0.6 45,497 - +0.2 45,497 - -0.1 45,497 - -0.3 45,497 - -1.1 45,497 - +0.1 45,497 - -0.4 45,497 - +0.7 45,497 - +0.2 45,497 - -2.4 45,497 - -0.1 45,497 - +0.4 45,762 - A4249_RS00265 0.43 -0.2 45,937 - A4249_RS00265 0.79 -0.0 46,035 + -0.5 46,035 + -0.5 46,035 + +0.0 46,036 - +2.4 46,036 - -0.4 46,036 - -0.1 46,036 - -2.6 46,036 - -0.0 46,066 + -1.5 46,067 - +0.7 46,067 - -0.3 46,426 + A4249_RS00270 0.76 -0.9 46,426 + A4249_RS00270 0.76 -3.0 46,427 - A4249_RS00270 0.77 -1.1 46,590 + -0.4 46,590 + -1.2 46,590 + -0.2 46,590 + -0.3 46,590 + +1.1 46,590 + -0.7 46,591 - -1.4 46,859 - A4249_RS00275 0.20 +0.9 46,859 - A4249_RS00275 0.20 +0.4 46,859 - A4249_RS00275 0.20 -2.1
Or see this region's nucleotide sequence