Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16680

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13900 and A4249_RS13905 are separated by 87 nucleotidesA4249_RS13905 and A4249_RS13910 are separated by 87 nucleotidesA4249_RS13910 and A4249_RS16680 are separated by 581 nucleotidesA4249_RS16680 and A4249_RS13920 are separated by 88 nucleotides A4249_RS13900: A4249_RS13900 - 23S ribosomal RNA, at 2,804,168 to 2,806,941 _RS13900 A4249_RS13905: A4249_RS13905 - 5S ribosomal RNA, at 2,807,029 to 2,807,143 _RS13905 A4249_RS13910: A4249_RS13910 - tRNA-Met, at 2,807,231 to 2,807,307 _RS13910 A4249_RS16680: A4249_RS16680 - hypothetical protein, at 2,807,889 to 2,808,050 _RS16680 A4249_RS13920: A4249_RS13920 - TonB-dependent receptor, at 2,808,139 to 2,810,172 _RS13920 Position (kb) 2807 2808 2809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2807.403 kb on + strandat 2807.403 kb on + strandat 2807.417 kb on + strandat 2807.417 kb on + strandat 2807.418 kb on - strandat 2807.418 kb on - strandat 2807.445 kb on - strandat 2807.490 kb on + strandat 2807.490 kb on + strandat 2807.491 kb on - strandat 2807.491 kb on - strandat 2807.589 kb on + strandat 2807.589 kb on + strandat 2807.644 kb on + strandat 2807.645 kb on - strandat 2807.645 kb on - strandat 2807.645 kb on - strandat 2807.664 kb on + strandat 2807.664 kb on + strandat 2807.664 kb on + strandat 2807.665 kb on - strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.817 kb on + strandat 2807.817 kb on + strandat 2807.817 kb on + strandat 2807.818 kb on - strandat 2807.818 kb on - strandat 2807.818 kb on - strandat 2807.818 kb on - strandat 2807.858 kb on - strandat 2807.858 kb on - strandat 2807.891 kb on - strandat 2807.956 kb on - strand, within A4249_RS16680at 2808.050 kb on + strandat 2808.050 kb on + strandat 2808.051 kb on - strandat 2808.150 kb on - strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.314 kb on + strandat 2808.315 kb on - strandat 2808.315 kb on - strandat 2808.315 kb on - strandat 2808.315 kb on - strandat 2808.315 kb on - strandat 2808.315 kb on - strandat 2808.432 kb on - strand, within A4249_RS13920at 2808.479 kb on + strand, within A4249_RS13920at 2808.479 kb on + strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.480 kb on - strand, within A4249_RS13920at 2808.533 kb on + strand, within A4249_RS13920at 2808.533 kb on + strand, within A4249_RS13920at 2808.534 kb on - strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.557 kb on + strand, within A4249_RS13920at 2808.558 kb on - strand, within A4249_RS13920at 2808.558 kb on - strand, within A4249_RS13920at 2808.558 kb on - strand, within A4249_RS13920at 2808.558 kb on - strand, within A4249_RS13920at 2808.558 kb on - strand, within A4249_RS13920at 2808.558 kb on - strand, within A4249_RS13920at 2808.587 kb on + strand, within A4249_RS13920at 2808.588 kb on - strand, within A4249_RS13920at 2808.588 kb on - strand, within A4249_RS13920at 2808.588 kb on - strand, within A4249_RS13920at 2808.588 kb on - strand, within A4249_RS13920at 2808.588 kb on - strand, within A4249_RS13920at 2808.588 kb on - strand, within A4249_RS13920at 2808.620 kb on + strand, within A4249_RS13920at 2808.620 kb on + strand, within A4249_RS13920at 2808.620 kb on + strand, within A4249_RS13920at 2808.620 kb on + strand, within A4249_RS13920at 2808.620 kb on + strand, within A4249_RS13920at 2808.621 kb on - strand, within A4249_RS13920at 2808.621 kb on - strand, within A4249_RS13920at 2808.621 kb on - strand, within A4249_RS13920at 2808.660 kb on + strand, within A4249_RS13920at 2808.660 kb on + strand, within A4249_RS13920at 2808.661 kb on - strand, within A4249_RS13920at 2808.661 kb on - strand, within A4249_RS13920at 2808.662 kb on + strand, within A4249_RS13920at 2808.662 kb on + strand, within A4249_RS13920at 2808.662 kb on + strand, within A4249_RS13920at 2808.662 kb on + strand, within A4249_RS13920at 2808.662 kb on + strand, within A4249_RS13920at 2808.662 kb on + strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.663 kb on - strand, within A4249_RS13920at 2808.674 kb on + strand, within A4249_RS13920at 2808.674 kb on + strand, within A4249_RS13920at 2808.674 kb on + strand, within A4249_RS13920at 2808.674 kb on + strand, within A4249_RS13920at 2808.674 kb on + strand, within A4249_RS13920at 2808.675 kb on - strand, within A4249_RS13920at 2808.675 kb on - strand, within A4249_RS13920at 2808.675 kb on - strand, within A4249_RS13920at 2808.675 kb on - strand, within A4249_RS13920at 2808.675 kb on - strand, within A4249_RS13920at 2808.675 kb on - strand, within A4249_RS13920at 2808.710 kb on + strand, within A4249_RS13920at 2808.710 kb on + strand, within A4249_RS13920at 2808.711 kb on - strand, within A4249_RS13920at 2808.711 kb on - strand, within A4249_RS13920at 2808.845 kb on - strand, within A4249_RS13920at 2808.850 kb on - strand, within A4249_RS13920at 2808.974 kb on + strand, within A4249_RS13920at 2808.974 kb on + strand, within A4249_RS13920at 2808.974 kb on + strand, within A4249_RS13920at 2809.026 kb on + strand, within A4249_RS13920at 2809.026 kb on + strand, within A4249_RS13920at 2809.026 kb on + strand, within A4249_RS13920at 2809.026 kb on + strand, within A4249_RS13920at 2809.027 kb on - strand, within A4249_RS13920at 2809.027 kb on - strand, within A4249_RS13920at 2809.027 kb on - strand, within A4249_RS13920at 2809.027 kb on - strand, within A4249_RS13920at 2809.027 kb on - strand, within A4249_RS13920at 2809.028 kb on + strand, within A4249_RS13920at 2809.028 kb on + strand, within A4249_RS13920at 2809.028 kb on + strand, within A4249_RS13920at 2809.028 kb on + strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920at 2809.029 kb on - strand, within A4249_RS13920

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,807,403 + +0.2
2,807,403 + +0.2
2,807,417 + -0.2
2,807,417 + -0.7
2,807,418 - -0.6
2,807,418 - +0.8
2,807,445 - -0.1
2,807,490 + -0.5
2,807,490 + +0.5
2,807,491 - -0.8
2,807,491 - -1.9
2,807,589 + +0.4
2,807,589 + -2.2
2,807,644 + -0.6
2,807,645 - -0.3
2,807,645 - -0.6
2,807,645 - -1.1
2,807,664 + +1.6
2,807,664 + +0.5
2,807,664 + -0.2
2,807,665 - -0.8
2,807,786 + +0.1
2,807,786 + +0.2
2,807,786 + -1.6
2,807,786 + -0.4
2,807,786 + -1.0
2,807,787 - -0.4
2,807,787 - -1.9
2,807,787 - -2.2
2,807,787 - +1.6
2,807,787 - +0.0
2,807,787 - -0.4
2,807,787 - -0.4
2,807,787 - -0.1
2,807,787 - -1.8
2,807,787 - +0.5
2,807,787 - -2.2
2,807,787 - +0.6
2,807,787 - -1.6
2,807,787 - +0.5
2,807,817 + -0.0
2,807,817 + +0.2
2,807,817 + +2.3
2,807,818 - +0.4
2,807,818 - -0.4
2,807,818 - -1.0
2,807,818 - +1.4
2,807,858 - -0.3
2,807,858 - +0.8
2,807,891 - +1.5
2,807,956 - A4249_RS16680 0.41 +0.3
2,808,050 + -0.7
2,808,050 + +0.3
2,808,051 - -0.2
2,808,150 - +0.7
2,808,314 + +0.5
2,808,314 + -0.3
2,808,314 + -0.1
2,808,314 + -1.6
2,808,314 + -0.7
2,808,314 + +0.8
2,808,314 + +0.5
2,808,314 + +0.9
2,808,314 + -0.5
2,808,314 + -0.9
2,808,315 - +0.4
2,808,315 - +0.1
2,808,315 - -3.5
2,808,315 - +0.4
2,808,315 - -0.3
2,808,315 - -0.8
2,808,432 - A4249_RS13920 0.14 -1.4
2,808,479 + A4249_RS13920 0.17 -0.7
2,808,479 + A4249_RS13920 0.17 -0.9
2,808,480 - A4249_RS13920 0.17 +0.7
2,808,480 - A4249_RS13920 0.17 -0.6
2,808,480 - A4249_RS13920 0.17 +2.6
2,808,480 - A4249_RS13920 0.17 -0.5
2,808,480 - A4249_RS13920 0.17 -0.1
2,808,480 - A4249_RS13920 0.17 -0.3
2,808,480 - A4249_RS13920 0.17 +1.6
2,808,480 - A4249_RS13920 0.17 +3.2
2,808,480 - A4249_RS13920 0.17 -0.5
2,808,533 + A4249_RS13920 0.19 +0.0
2,808,533 + A4249_RS13920 0.19 -0.2
2,808,534 - A4249_RS13920 0.19 +0.3
2,808,557 + A4249_RS13920 0.21 -0.4
2,808,557 + A4249_RS13920 0.21 +0.4
2,808,557 + A4249_RS13920 0.21 +0.8
2,808,557 + A4249_RS13920 0.21 -1.2
2,808,557 + A4249_RS13920 0.21 +0.2
2,808,557 + A4249_RS13920 0.21 +1.6
2,808,557 + A4249_RS13920 0.21 +1.6
2,808,558 - A4249_RS13920 0.21 +0.1
2,808,558 - A4249_RS13920 0.21 +0.2
2,808,558 - A4249_RS13920 0.21 -1.4
2,808,558 - A4249_RS13920 0.21 +0.4
2,808,558 - A4249_RS13920 0.21 -0.6
2,808,558 - A4249_RS13920 0.21 +0.6
2,808,587 + A4249_RS13920 0.22 +0.6
2,808,588 - A4249_RS13920 0.22 -0.1
2,808,588 - A4249_RS13920 0.22 -2.2
2,808,588 - A4249_RS13920 0.22 +0.4
2,808,588 - A4249_RS13920 0.22 +0.2
2,808,588 - A4249_RS13920 0.22 -1.2
2,808,588 - A4249_RS13920 0.22 +0.6
2,808,620 + A4249_RS13920 0.24 +2.0
2,808,620 + A4249_RS13920 0.24 -1.5
2,808,620 + A4249_RS13920 0.24 +1.0
2,808,620 + A4249_RS13920 0.24 +0.6
2,808,620 + A4249_RS13920 0.24 +0.9
2,808,621 - A4249_RS13920 0.24 -1.2
2,808,621 - A4249_RS13920 0.24 +0.1
2,808,621 - A4249_RS13920 0.24 +0.8
2,808,660 + A4249_RS13920 0.26 -0.8
2,808,660 + A4249_RS13920 0.26 -0.3
2,808,661 - A4249_RS13920 0.26 -0.6
2,808,661 - A4249_RS13920 0.26 +0.8
2,808,662 + A4249_RS13920 0.26 -0.9
2,808,662 + A4249_RS13920 0.26 +0.0
2,808,662 + A4249_RS13920 0.26 +0.8
2,808,662 + A4249_RS13920 0.26 +0.4
2,808,662 + A4249_RS13920 0.26 -1.5
2,808,662 + A4249_RS13920 0.26 -2.6
2,808,663 - A4249_RS13920 0.26 +1.2
2,808,663 - A4249_RS13920 0.26 -0.1
2,808,663 - A4249_RS13920 0.26 +0.7
2,808,663 - A4249_RS13920 0.26 +0.6
2,808,663 - A4249_RS13920 0.26 +0.5
2,808,663 - A4249_RS13920 0.26 +0.0
2,808,663 - A4249_RS13920 0.26 +0.5
2,808,674 + A4249_RS13920 0.26 -0.1
2,808,674 + A4249_RS13920 0.26 -0.4
2,808,674 + A4249_RS13920 0.26 -1.9
2,808,674 + A4249_RS13920 0.26 -0.2
2,808,674 + A4249_RS13920 0.26 -0.8
2,808,675 - A4249_RS13920 0.26 +1.0
2,808,675 - A4249_RS13920 0.26 -1.5
2,808,675 - A4249_RS13920 0.26 +0.1
2,808,675 - A4249_RS13920 0.26 +0.4
2,808,675 - A4249_RS13920 0.26 -0.7
2,808,675 - A4249_RS13920 0.26 -0.7
2,808,710 + A4249_RS13920 0.28 +0.4
2,808,710 + A4249_RS13920 0.28 +0.1
2,808,711 - A4249_RS13920 0.28 -0.2
2,808,711 - A4249_RS13920 0.28 -0.2
2,808,845 - A4249_RS13920 0.35 +2.0
2,808,850 - A4249_RS13920 0.35 +0.6
2,808,974 + A4249_RS13920 0.41 +2.2
2,808,974 + A4249_RS13920 0.41 +0.8
2,808,974 + A4249_RS13920 0.41 -0.2
2,809,026 + A4249_RS13920 0.44 -1.3
2,809,026 + A4249_RS13920 0.44 -0.2
2,809,026 + A4249_RS13920 0.44 -1.9
2,809,026 + A4249_RS13920 0.44 +0.2
2,809,027 - A4249_RS13920 0.44 -2.6
2,809,027 - A4249_RS13920 0.44 +0.6
2,809,027 - A4249_RS13920 0.44 -0.8
2,809,027 - A4249_RS13920 0.44 +0.4
2,809,027 - A4249_RS13920 0.44 +0.0
2,809,028 + A4249_RS13920 0.44 +0.7
2,809,028 + A4249_RS13920 0.44 +1.5
2,809,028 + A4249_RS13920 0.44 +0.4
2,809,028 + A4249_RS13920 0.44 -2.1
2,809,029 - A4249_RS13920 0.44 -0.3
2,809,029 - A4249_RS13920 0.44 +0.4
2,809,029 - A4249_RS13920 0.44 -0.0
2,809,029 - A4249_RS13920 0.44 +0.2
2,809,029 - A4249_RS13920 0.44 -0.1
2,809,029 - A4249_RS13920 0.44 +1.0
2,809,029 - A4249_RS13920 0.44 +0.8
2,809,029 - A4249_RS13920 0.44 -0.6

Or see this region's nucleotide sequence