Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15505

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15495 and A4249_RS15500 are separated by 112 nucleotidesA4249_RS15500 and A4249_RS15505 are separated by 236 nucleotidesA4249_RS15505 and A4249_RS15510 are separated by 73 nucleotidesA4249_RS15510 and A4249_RS15515 are separated by 300 nucleotides A4249_RS15495: A4249_RS15495 - M1 family metallopeptidase, at 3,137,517 to 3,139,241 _RS15495 A4249_RS15500: A4249_RS15500 - 50S ribosomal protein L28, at 3,139,354 to 3,139,656 _RS15500 A4249_RS15505: A4249_RS15505 - DUF3617 family protein, at 3,139,893 to 3,140,372 _RS15505 A4249_RS15510: A4249_RS15510 - CarD family transcriptional regulator, at 3,140,446 to 3,140,976 _RS15510 A4249_RS15515: A4249_RS15515 - ferredoxin family protein, at 3,141,277 to 3,141,618 _RS15515 Position (kb) 3139 3140 3141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3139.139 kb on - strandat 3139.273 kb on + strandat 3139.274 kb on - strandat 3139.337 kb on + strandat 3139.337 kb on + strandat 3139.337 kb on + strandat 3139.337 kb on + strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.338 kb on - strandat 3139.752 kb on - strandat 3139.752 kb on - strandat 3139.838 kb on + strandat 3139.838 kb on + strandat 3139.838 kb on + strandat 3139.839 kb on - strandat 3139.839 kb on - strandat 3139.839 kb on - strandat 3139.839 kb on - strandat 3139.847 kb on + strandat 3139.848 kb on - strandat 3139.848 kb on - strandat 3139.848 kb on - strandat 3139.848 kb on - strandat 3139.848 kb on - strandat 3139.848 kb on - strandat 3140.043 kb on + strand, within A4249_RS15505at 3140.043 kb on + strand, within A4249_RS15505at 3140.043 kb on + strand, within A4249_RS15505at 3140.043 kb on + strand, within A4249_RS15505at 3140.043 kb on + strand, within A4249_RS15505at 3140.044 kb on - strand, within A4249_RS15505at 3140.044 kb on - strand, within A4249_RS15505at 3140.048 kb on + strand, within A4249_RS15505at 3140.048 kb on + strand, within A4249_RS15505at 3140.048 kb on + strand, within A4249_RS15505at 3140.049 kb on - strand, within A4249_RS15505at 3140.049 kb on - strand, within A4249_RS15505at 3140.049 kb on - strand, within A4249_RS15505at 3140.247 kb on + strand, within A4249_RS15505at 3140.304 kb on + strand, within A4249_RS15505at 3140.304 kb on + strand, within A4249_RS15505at 3140.304 kb on + strand, within A4249_RS15505at 3140.304 kb on + strand, within A4249_RS15505at 3140.305 kb on - strand, within A4249_RS15505at 3140.305 kb on - strand, within A4249_RS15505at 3140.305 kb on - strand, within A4249_RS15505at 3140.305 kb on - strand, within A4249_RS15505at 3140.305 kb on - strand, within A4249_RS15505at 3140.305 kb on - strand, within A4249_RS15505at 3140.306 kb on + strand, within A4249_RS15505at 3140.307 kb on - strand, within A4249_RS15505at 3140.365 kb on - strandat 3140.365 kb on - strandat 3140.447 kb on + strandat 3140.447 kb on + strandat 3140.448 kb on - strandat 3140.448 kb on - strandat 3141.244 kb on + strandat 3141.244 kb on + strandat 3141.244 kb on + strandat 3141.244 kb on + strandat 3141.244 kb on + strandat 3141.245 kb on - strandat 3141.245 kb on - strandat 3141.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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3,139,139 - -0.3
3,139,273 + -0.2
3,139,274 - +0.2
3,139,337 + +0.2
3,139,337 + +1.3
3,139,337 + -2.5
3,139,337 + -0.7
3,139,338 - -0.2
3,139,338 - -3.2
3,139,338 - -0.7
3,139,338 - -0.1
3,139,338 - -1.4
3,139,338 - +0.4
3,139,338 - +0.6
3,139,338 - +0.5
3,139,338 - +2.9
3,139,338 - +0.0
3,139,338 - +0.5
3,139,338 - +0.8
3,139,338 - +1.3
3,139,752 - +0.2
3,139,752 - -1.6
3,139,838 + -0.1
3,139,838 + -1.2
3,139,838 + +2.3
3,139,839 - -0.2
3,139,839 - +0.7
3,139,839 - -2.2
3,139,839 - -0.7
3,139,847 + -1.2
3,139,848 - +1.8
3,139,848 - +0.5
3,139,848 - +0.1
3,139,848 - +0.2
3,139,848 - +0.6
3,139,848 - +0.9
3,140,043 + A4249_RS15505 0.31 -1.8
3,140,043 + A4249_RS15505 0.31 -2.7
3,140,043 + A4249_RS15505 0.31 -1.7
3,140,043 + A4249_RS15505 0.31 -2.9
3,140,043 + A4249_RS15505 0.31 -3.2
3,140,044 - A4249_RS15505 0.31 -1.2
3,140,044 - A4249_RS15505 0.31 +1.9
3,140,048 + A4249_RS15505 0.32 -1.2
3,140,048 + A4249_RS15505 0.32 +0.3
3,140,048 + A4249_RS15505 0.32 -2.4
3,140,049 - A4249_RS15505 0.33 -2.8
3,140,049 - A4249_RS15505 0.33 -1.4
3,140,049 - A4249_RS15505 0.33 -1.4
3,140,247 + A4249_RS15505 0.74 -1.2
3,140,304 + A4249_RS15505 0.86 -1.9
3,140,304 + A4249_RS15505 0.86 -3.8
3,140,304 + A4249_RS15505 0.86 -0.7
3,140,304 + A4249_RS15505 0.86 -3.7
3,140,305 - A4249_RS15505 0.86 -1.2
3,140,305 - A4249_RS15505 0.86 -1.8
3,140,305 - A4249_RS15505 0.86 -1.7
3,140,305 - A4249_RS15505 0.86 -2.7
3,140,305 - A4249_RS15505 0.86 -0.8
3,140,305 - A4249_RS15505 0.86 +0.3
3,140,306 + A4249_RS15505 0.86 -1.7
3,140,307 - A4249_RS15505 0.86 -0.7
3,140,365 - -0.5
3,140,365 - +0.2
3,140,447 + -1.7
3,140,447 + -0.0
3,140,448 - -0.7
3,140,448 - -1.3
3,141,244 + -0.2
3,141,244 + -1.5
3,141,244 + -1.7
3,141,244 + +0.9
3,141,244 + -2.2
3,141,245 - -0.0
3,141,245 - -0.4
3,141,245 - -0.2

Or see this region's nucleotide sequence