Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13650

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13640 and A4249_RS13645 overlap by 4 nucleotidesA4249_RS13645 and A4249_RS13650 are separated by 72 nucleotidesA4249_RS13650 and A4249_RS13655 are separated by 24 nucleotidesA4249_RS13655 and A4249_RS13660 overlap by 4 nucleotides A4249_RS13640: A4249_RS13640 - molecular chaperone DnaJ, at 2,757,007 to 2,758,209 _RS13640 A4249_RS13645: A4249_RS13645 - 4-hydroxy-tetrahydrodipicolinate reductase, at 2,758,206 to 2,758,955 _RS13645 A4249_RS13650: A4249_RS13650 - DNA polymerase III subunit epsilon, at 2,759,028 to 2,759,750 _RS13650 A4249_RS13655: A4249_RS13655 - dephospho-CoA kinase, at 2,759,775 to 2,760,407 _RS13655 A4249_RS13660: A4249_RS13660 - shikimate dehydrogenase, at 2,760,404 to 2,761,234 _RS13660 Position (kb) 2759 2760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2758.954 kb on - strandat 2758.954 kb on - strandat 2758.954 kb on - strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.019 kb on - strandat 2759.019 kb on - strandat 2759.019 kb on - strandat 2759.019 kb on - strandat 2759.030 kb on - strandat 2759.059 kb on + strandat 2759.085 kb on - strandat 2759.085 kb on - strandat 2759.341 kb on - strand, within A4249_RS13650at 2759.759 kb on - strandat 2759.759 kb on - strandat 2759.811 kb on + strandat 2759.812 kb on - strandat 2759.812 kb on - strandat 2760.582 kb on + strand, within A4249_RS13660

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,758,954 - +1.2
2,758,954 - -0.5
2,758,954 - +0.9
2,759,018 + +1.7
2,759,018 + +0.4
2,759,018 + +0.4
2,759,018 + -0.8
2,759,018 + -0.8
2,759,018 + -0.5
2,759,018 + +1.5
2,759,018 + +0.4
2,759,018 + +0.3
2,759,018 + -0.3
2,759,018 + +2.1
2,759,018 + +0.7
2,759,019 - +1.0
2,759,019 - +1.6
2,759,019 - +1.4
2,759,019 - -3.2
2,759,030 - +0.5
2,759,059 + +2.4
2,759,085 - +1.6
2,759,085 - +1.3
2,759,341 - A4249_RS13650 0.43 +1.5
2,759,759 - +0.1
2,759,759 - +0.4
2,759,811 + +0.7
2,759,812 - +1.5
2,759,812 - +1.3
2,760,582 + A4249_RS13660 0.21 -1.6

Or see this region's nucleotide sequence