Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13195

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13190 and A4249_RS13195 are separated by 1 nucleotidesA4249_RS13195 and A4249_RS13200 are separated by 2 nucleotides A4249_RS13190: A4249_RS13190 - 2-oxo acid dehydrogenase subunit E2, at 2,657,209 to 2,658,864 _RS13190 A4249_RS13195: A4249_RS13195 - alpha-ketoacid dehydrogenase subunit beta, at 2,658,866 to 2,659,990 _RS13195 A4249_RS13200: A4249_RS13200 - thiamine pyrophosphate-dependent enzyme, at 2,659,993 to 2,661,228 _RS13200 Position (kb) 2658 2659 2660Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2657.918 kb on + strand, within A4249_RS13190at 2657.919 kb on - strand, within A4249_RS13190at 2657.919 kb on - strand, within A4249_RS13190at 2658.241 kb on + strand, within A4249_RS13190at 2658.242 kb on - strand, within A4249_RS13190at 2658.361 kb on - strand, within A4249_RS13190at 2658.485 kb on + strand, within A4249_RS13190at 2658.485 kb on + strand, within A4249_RS13190at 2658.485 kb on + strand, within A4249_RS13190at 2658.486 kb on - strand, within A4249_RS13190at 2658.486 kb on - strand, within A4249_RS13190at 2658.927 kb on + strandat 2658.927 kb on + strandat 2658.928 kb on - strandat 2658.928 kb on - strandat 2659.000 kb on - strand, within A4249_RS13195at 2659.272 kb on + strand, within A4249_RS13195at 2659.273 kb on - strand, within A4249_RS13195at 2659.273 kb on - strand, within A4249_RS13195at 2659.356 kb on + strand, within A4249_RS13195at 2659.356 kb on + strand, within A4249_RS13195at 2659.357 kb on - strand, within A4249_RS13195at 2659.431 kb on + strand, within A4249_RS13195at 2659.468 kb on + strand, within A4249_RS13195at 2659.469 kb on - strand, within A4249_RS13195at 2659.469 kb on - strand, within A4249_RS13195at 2659.559 kb on - strand, within A4249_RS13195at 2659.614 kb on + strand, within A4249_RS13195at 2659.614 kb on + strand, within A4249_RS13195at 2659.615 kb on - strand, within A4249_RS13195at 2659.615 kb on - strand, within A4249_RS13195at 2659.623 kb on + strand, within A4249_RS13195at 2659.623 kb on + strand, within A4249_RS13195at 2659.623 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.789 kb on - strand, within A4249_RS13195at 2659.789 kb on - strand, within A4249_RS13195at 2660.046 kb on - strandat 2660.303 kb on + strand, within A4249_RS13200at 2660.532 kb on - strand, within A4249_RS13200at 2660.625 kb on - strand, within A4249_RS13200at 2660.699 kb on + strand, within A4249_RS13200at 2660.700 kb on - strand, within A4249_RS13200at 2660.714 kb on + strand, within A4249_RS13200at 2660.714 kb on + strand, within A4249_RS13200at 2660.714 kb on + strand, within A4249_RS13200at 2660.715 kb on - strand, within A4249_RS13200at 2660.762 kb on + strand, within A4249_RS13200at 2660.763 kb on - strand, within A4249_RS13200at 2660.763 kb on - strand, within A4249_RS13200at 2660.825 kb on + strand, within A4249_RS13200at 2660.907 kb on - strand, within A4249_RS13200at 2660.907 kb on - strand, within A4249_RS13200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,657,918 + A4249_RS13190 0.43 -0.6
2,657,919 - A4249_RS13190 0.43 -2.6
2,657,919 - A4249_RS13190 0.43 -3.0
2,658,241 + A4249_RS13190 0.62 -3.8
2,658,242 - A4249_RS13190 0.62 -1.0
2,658,361 - A4249_RS13190 0.70 -1.9
2,658,485 + A4249_RS13190 0.77 -1.6
2,658,485 + A4249_RS13190 0.77 -2.2
2,658,485 + A4249_RS13190 0.77 -3.0
2,658,486 - A4249_RS13190 0.77 -1.2
2,658,486 - A4249_RS13190 0.77 -2.6
2,658,927 + -1.2
2,658,927 + -2.8
2,658,928 - +0.4
2,658,928 - -1.6
2,659,000 - A4249_RS13195 0.12 -0.2
2,659,272 + A4249_RS13195 0.36 -1.2
2,659,273 - A4249_RS13195 0.36 +0.4
2,659,273 - A4249_RS13195 0.36 -2.2
2,659,356 + A4249_RS13195 0.44 -0.6
2,659,356 + A4249_RS13195 0.44 -2.9
2,659,357 - A4249_RS13195 0.44 +1.4
2,659,431 + A4249_RS13195 0.50 -0.6
2,659,468 + A4249_RS13195 0.54 -2.2
2,659,469 - A4249_RS13195 0.54 -1.9
2,659,469 - A4249_RS13195 0.54 -1.2
2,659,559 - A4249_RS13195 0.62 -1.9
2,659,614 + A4249_RS13195 0.66 -2.4
2,659,614 + A4249_RS13195 0.66 +0.4
2,659,615 - A4249_RS13195 0.67 -1.9
2,659,615 - A4249_RS13195 0.67 +0.4
2,659,623 + A4249_RS13195 0.67 +0.4
2,659,623 + A4249_RS13195 0.67 +1.4
2,659,623 + A4249_RS13195 0.67 +0.4
2,659,629 + A4249_RS13195 0.68 -2.8
2,659,629 + A4249_RS13195 0.68 +0.4
2,659,629 + A4249_RS13195 0.68 +0.4
2,659,629 + A4249_RS13195 0.68 -1.2
2,659,629 + A4249_RS13195 0.68 -2.2
2,659,630 - A4249_RS13195 0.68 -3.7
2,659,630 - A4249_RS13195 0.68 -1.9
2,659,630 - A4249_RS13195 0.68 -1.6
2,659,630 - A4249_RS13195 0.68 -2.5
2,659,789 - A4249_RS13195 0.82 -1.2
2,659,789 - A4249_RS13195 0.82 +0.4
2,660,046 - -1.2
2,660,303 + A4249_RS13200 0.25 -2.2
2,660,532 - A4249_RS13200 0.44 +0.4
2,660,625 - A4249_RS13200 0.51 +1.0
2,660,699 + A4249_RS13200 0.57 -1.9
2,660,700 - A4249_RS13200 0.57 -1.6
2,660,714 + A4249_RS13200 0.58 +0.4
2,660,714 + A4249_RS13200 0.58 -1.6
2,660,714 + A4249_RS13200 0.58 +1.0
2,660,715 - A4249_RS13200 0.58 +0.4
2,660,762 + A4249_RS13200 0.62 -1.9
2,660,763 - A4249_RS13200 0.62 +0.4
2,660,763 - A4249_RS13200 0.62 -1.6
2,660,825 + A4249_RS13200 0.67 +0.4
2,660,907 - A4249_RS13200 0.74 -1.2
2,660,907 - A4249_RS13200 0.74 -2.8

Or see this region's nucleotide sequence