Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13190

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13185 and A4249_RS13190 are separated by 462 nucleotidesA4249_RS13190 and A4249_RS13195 are separated by 1 nucleotides A4249_RS13185: A4249_RS13185 - dihydrolipoyl dehydrogenase, at 2,655,349 to 2,656,746 _RS13185 A4249_RS13190: A4249_RS13190 - 2-oxo acid dehydrogenase subunit E2, at 2,657,209 to 2,658,864 _RS13190 A4249_RS13195: A4249_RS13195 - alpha-ketoacid dehydrogenase subunit beta, at 2,658,866 to 2,659,990 _RS13195 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2656.453 kb on - strand, within A4249_RS13185at 2656.691 kb on + strandat 2656.691 kb on + strandat 2656.857 kb on + strandat 2656.857 kb on + strandat 2656.857 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.922 kb on + strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.923 kb on - strandat 2656.932 kb on + strandat 2656.932 kb on + strandat 2656.932 kb on + strandat 2656.932 kb on + strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.933 kb on - strandat 2656.969 kb on - strandat 2657.041 kb on - strandat 2657.119 kb on + strandat 2657.119 kb on + strandat 2657.119 kb on + strandat 2657.119 kb on + strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.120 kb on - strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.204 kb on + strandat 2657.205 kb on - strandat 2657.205 kb on - strandat 2657.205 kb on - strandat 2657.205 kb on - strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.206 kb on + strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.207 kb on - strandat 2657.547 kb on - strand, within A4249_RS13190at 2657.816 kb on + strand, within A4249_RS13190at 2657.816 kb on + strand, within A4249_RS13190at 2657.817 kb on - strand, within A4249_RS13190at 2657.817 kb on - strand, within A4249_RS13190at 2657.918 kb on + strand, within A4249_RS13190at 2657.919 kb on - strand, within A4249_RS13190at 2657.919 kb on - strand, within A4249_RS13190at 2658.241 kb on + strand, within A4249_RS13190at 2658.242 kb on - strand, within A4249_RS13190at 2658.361 kb on - strand, within A4249_RS13190at 2658.485 kb on + strand, within A4249_RS13190at 2658.485 kb on + strand, within A4249_RS13190at 2658.485 kb on + strand, within A4249_RS13190at 2658.486 kb on - strand, within A4249_RS13190at 2658.486 kb on - strand, within A4249_RS13190at 2658.927 kb on + strandat 2658.927 kb on + strandat 2658.928 kb on - strandat 2658.928 kb on - strandat 2659.000 kb on - strand, within A4249_RS13195at 2659.272 kb on + strand, within A4249_RS13195at 2659.273 kb on - strand, within A4249_RS13195at 2659.273 kb on - strand, within A4249_RS13195at 2659.356 kb on + strand, within A4249_RS13195at 2659.356 kb on + strand, within A4249_RS13195at 2659.357 kb on - strand, within A4249_RS13195at 2659.431 kb on + strand, within A4249_RS13195at 2659.468 kb on + strand, within A4249_RS13195at 2659.469 kb on - strand, within A4249_RS13195at 2659.469 kb on - strand, within A4249_RS13195at 2659.559 kb on - strand, within A4249_RS13195at 2659.614 kb on + strand, within A4249_RS13195at 2659.614 kb on + strand, within A4249_RS13195at 2659.615 kb on - strand, within A4249_RS13195at 2659.615 kb on - strand, within A4249_RS13195at 2659.623 kb on + strand, within A4249_RS13195at 2659.623 kb on + strand, within A4249_RS13195at 2659.623 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.629 kb on + strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.630 kb on - strand, within A4249_RS13195at 2659.789 kb on - strand, within A4249_RS13195at 2659.789 kb on - strand, within A4249_RS13195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,656,453 - A4249_RS13185 0.79 +0.4
2,656,691 + -0.8
2,656,691 + -1.3
2,656,857 + +1.2
2,656,857 + +0.4
2,656,857 + +0.2
2,656,922 + +0.0
2,656,922 + +0.1
2,656,922 + +0.5
2,656,922 + +3.9
2,656,922 + +0.8
2,656,923 - -1.5
2,656,923 - +0.1
2,656,923 - +0.0
2,656,923 - -1.0
2,656,923 - -0.1
2,656,923 - -0.2
2,656,923 - -0.5
2,656,923 - +1.3
2,656,923 - -2.5
2,656,923 - +0.9
2,656,923 - +0.3
2,656,923 - +0.4
2,656,932 + +0.6
2,656,932 + -1.9
2,656,932 + -0.5
2,656,932 + -0.2
2,656,933 - +0.1
2,656,933 - +0.4
2,656,933 - -0.3
2,656,933 - -1.6
2,656,933 - -0.6
2,656,933 - -0.1
2,656,933 - -1.4
2,656,969 - +0.4
2,657,041 - +0.7
2,657,119 + +0.4
2,657,119 + +0.4
2,657,119 + -1.3
2,657,119 + +1.0
2,657,120 - -0.6
2,657,120 - +0.8
2,657,120 - -2.3
2,657,120 - -0.8
2,657,120 - +0.2
2,657,120 - +0.2
2,657,120 - +0.8
2,657,204 + -0.2
2,657,204 + +0.4
2,657,204 + -1.2
2,657,204 + -2.6
2,657,204 + +1.0
2,657,204 + -3.4
2,657,205 - +1.3
2,657,205 - +0.6
2,657,205 - +0.1
2,657,205 - -1.9
2,657,206 + -1.6
2,657,206 + -1.1
2,657,206 + +3.6
2,657,206 + +0.3
2,657,206 + -0.8
2,657,206 + -3.0
2,657,206 + +0.2
2,657,207 - -1.4
2,657,207 - +1.7
2,657,207 - +0.5
2,657,207 - -0.7
2,657,207 - -0.9
2,657,207 - +0.7
2,657,207 - -0.8
2,657,207 - -0.7
2,657,207 - +0.1
2,657,207 - +1.4
2,657,207 - +0.9
2,657,207 - +0.1
2,657,207 - +0.3
2,657,207 - -0.5
2,657,207 - +1.4
2,657,207 - -2.6
2,657,207 - +0.2
2,657,547 - A4249_RS13190 0.20 -2.7
2,657,816 + A4249_RS13190 0.37 -2.2
2,657,816 + A4249_RS13190 0.37 -1.2
2,657,817 - A4249_RS13190 0.37 -2.4
2,657,817 - A4249_RS13190 0.37 -0.6
2,657,918 + A4249_RS13190 0.43 -0.6
2,657,919 - A4249_RS13190 0.43 -2.6
2,657,919 - A4249_RS13190 0.43 -3.0
2,658,241 + A4249_RS13190 0.62 -3.8
2,658,242 - A4249_RS13190 0.62 -1.0
2,658,361 - A4249_RS13190 0.70 -1.9
2,658,485 + A4249_RS13190 0.77 -1.6
2,658,485 + A4249_RS13190 0.77 -2.2
2,658,485 + A4249_RS13190 0.77 -3.0
2,658,486 - A4249_RS13190 0.77 -1.2
2,658,486 - A4249_RS13190 0.77 -2.6
2,658,927 + -1.2
2,658,927 + -2.8
2,658,928 - +0.4
2,658,928 - -1.6
2,659,000 - A4249_RS13195 0.12 -0.2
2,659,272 + A4249_RS13195 0.36 -1.2
2,659,273 - A4249_RS13195 0.36 +0.4
2,659,273 - A4249_RS13195 0.36 -2.2
2,659,356 + A4249_RS13195 0.44 -0.6
2,659,356 + A4249_RS13195 0.44 -2.9
2,659,357 - A4249_RS13195 0.44 +1.4
2,659,431 + A4249_RS13195 0.50 -0.6
2,659,468 + A4249_RS13195 0.54 -2.2
2,659,469 - A4249_RS13195 0.54 -1.9
2,659,469 - A4249_RS13195 0.54 -1.2
2,659,559 - A4249_RS13195 0.62 -1.9
2,659,614 + A4249_RS13195 0.66 -2.4
2,659,614 + A4249_RS13195 0.66 +0.4
2,659,615 - A4249_RS13195 0.67 -1.9
2,659,615 - A4249_RS13195 0.67 +0.4
2,659,623 + A4249_RS13195 0.67 +0.4
2,659,623 + A4249_RS13195 0.67 +1.4
2,659,623 + A4249_RS13195 0.67 +0.4
2,659,629 + A4249_RS13195 0.68 -2.8
2,659,629 + A4249_RS13195 0.68 +0.4
2,659,629 + A4249_RS13195 0.68 +0.4
2,659,629 + A4249_RS13195 0.68 -1.2
2,659,629 + A4249_RS13195 0.68 -2.2
2,659,630 - A4249_RS13195 0.68 -3.7
2,659,630 - A4249_RS13195 0.68 -1.9
2,659,630 - A4249_RS13195 0.68 -1.6
2,659,630 - A4249_RS13195 0.68 -2.5
2,659,789 - A4249_RS13195 0.82 -1.2
2,659,789 - A4249_RS13195 0.82 +0.4

Or see this region's nucleotide sequence