Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12555

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12545 and A4249_RS12550 are separated by 1 nucleotidesA4249_RS12550 and A4249_RS12555 overlap by 4 nucleotidesA4249_RS12555 and A4249_RS12560 are separated by 73 nucleotidesA4249_RS12560 and A4249_RS12565 are separated by 6 nucleotides A4249_RS12545: A4249_RS12545 - diaminopimelate decarboxylase, at 2,516,395 to 2,517,669 _RS12545 A4249_RS12550: A4249_RS12550 - hypothetical protein, at 2,517,671 to 2,517,901 _RS12550 A4249_RS12555: A4249_RS12555 - argininosuccinate lyase, at 2,517,898 to 2,519,262 _RS12555 A4249_RS12560: A4249_RS12560 - TlpA disulfide reductase family protein, at 2,519,336 to 2,520,001 _RS12560 A4249_RS12565: A4249_RS12565 - 50S ribosomal protein L7/L12 domain protein, at 2,520,008 to 2,520,319 _RS12565 Position (kb) 2517 2518 2519 2520Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2516.925 kb on - strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.110 kb on + strand, within A4249_RS12545at 2517.111 kb on - strand, within A4249_RS12545at 2517.111 kb on - strand, within A4249_RS12545at 2517.111 kb on - strand, within A4249_RS12545at 2517.111 kb on - strand, within A4249_RS12545at 2517.111 kb on - strand, within A4249_RS12545at 2517.165 kb on + strand, within A4249_RS12545at 2517.166 kb on - strand, within A4249_RS12545at 2517.340 kb on - strand, within A4249_RS12545at 2517.340 kb on - strand, within A4249_RS12545at 2517.549 kb on - strandat 2517.549 kb on - strandat 2517.549 kb on - strandat 2517.549 kb on - strandat 2517.575 kb on + strandat 2517.575 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.581 kb on + strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.582 kb on - strandat 2517.672 kb on + strandat 2517.673 kb on - strandat 2517.673 kb on - strandat 2517.673 kb on - strandat 2517.959 kb on + strandat 2517.959 kb on + strandat 2517.960 kb on - strandat 2517.960 kb on - strandat 2517.960 kb on - strandat 2517.960 kb on - strandat 2517.960 kb on - strandat 2518.004 kb on + strandat 2518.004 kb on + strandat 2518.004 kb on + strandat 2518.004 kb on + strandat 2518.005 kb on - strandat 2518.005 kb on - strandat 2518.216 kb on - strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.311 kb on + strand, within A4249_RS12555at 2518.312 kb on - strand, within A4249_RS12555at 2518.312 kb on - strand, within A4249_RS12555at 2518.312 kb on - strand, within A4249_RS12555at 2518.312 kb on - strand, within A4249_RS12555at 2518.322 kb on + strand, within A4249_RS12555at 2518.322 kb on + strand, within A4249_RS12555at 2518.323 kb on - strand, within A4249_RS12555at 2518.323 kb on - strand, within A4249_RS12555at 2518.420 kb on - strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.757 kb on + strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2518.758 kb on - strand, within A4249_RS12555at 2519.427 kb on + strand, within A4249_RS12560at 2519.427 kb on + strand, within A4249_RS12560at 2519.428 kb on - strand, within A4249_RS12560at 2519.428 kb on - strand, within A4249_RS12560at 2519.428 kb on - strand, within A4249_RS12560at 2519.429 kb on + strand, within A4249_RS12560at 2519.429 kb on + strand, within A4249_RS12560at 2519.429 kb on + strand, within A4249_RS12560at 2519.429 kb on + strand, within A4249_RS12560at 2519.430 kb on - strand, within A4249_RS12560at 2519.430 kb on - strand, within A4249_RS12560at 2519.567 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.705 kb on + strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.706 kb on - strand, within A4249_RS12560at 2519.813 kb on + strand, within A4249_RS12560at 2519.813 kb on + strand, within A4249_RS12560at 2519.813 kb on + strand, within A4249_RS12560at 2519.813 kb on + strand, within A4249_RS12560at 2519.813 kb on + strand, within A4249_RS12560at 2519.814 kb on - strand, within A4249_RS12560at 2519.814 kb on - strand, within A4249_RS12560at 2520.009 kb on + strandat 2520.009 kb on + strandat 2520.009 kb on + strandat 2520.010 kb on - strandat 2520.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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2,516,925 - A4249_RS12545 0.42 -1.9
2,517,110 + A4249_RS12545 0.56 +0.4
2,517,110 + A4249_RS12545 0.56 -5.8
2,517,110 + A4249_RS12545 0.56 -4.8
2,517,110 + A4249_RS12545 0.56 -2.2
2,517,110 + A4249_RS12545 0.56 -1.2
2,517,110 + A4249_RS12545 0.56 -4.6
2,517,110 + A4249_RS12545 0.56 -2.2
2,517,111 - A4249_RS12545 0.56 -1.8
2,517,111 - A4249_RS12545 0.56 -2.9
2,517,111 - A4249_RS12545 0.56 -2.2
2,517,111 - A4249_RS12545 0.56 -4.2
2,517,111 - A4249_RS12545 0.56 -4.6
2,517,165 + A4249_RS12545 0.60 -4.5
2,517,166 - A4249_RS12545 0.60 -4.1
2,517,340 - A4249_RS12545 0.74 +0.4
2,517,340 - A4249_RS12545 0.74 -3.7
2,517,549 - -4.4
2,517,549 - -4.5
2,517,549 - -2.9
2,517,549 - -4.7
2,517,575 + -3.3
2,517,575 + -3.9
2,517,581 + +0.4
2,517,581 + -3.7
2,517,581 + -3.7
2,517,581 + -1.9
2,517,581 + -3.6
2,517,581 + -3.5
2,517,581 + -2.8
2,517,581 + -2.6
2,517,581 + +0.4
2,517,581 + -3.9
2,517,581 + -0.6
2,517,581 + -2.6
2,517,581 + -3.4
2,517,581 + -2.8
2,517,581 + -1.2
2,517,581 + -0.6
2,517,581 + -2.2
2,517,581 + -2.4
2,517,581 + +0.4
2,517,581 + -1.9
2,517,581 + -1.6
2,517,581 + -1.6
2,517,581 + -3.3
2,517,581 + -1.6
2,517,581 + -4.0
2,517,582 - -2.6
2,517,582 - -3.3
2,517,582 - -1.2
2,517,582 - -4.9
2,517,582 - -3.8
2,517,582 - -2.4
2,517,582 - -2.8
2,517,582 - -4.0
2,517,582 - -2.5
2,517,582 - -2.8
2,517,582 - -3.6
2,517,582 - -2.4
2,517,582 - -1.9
2,517,582 - -4.6
2,517,582 - -2.2
2,517,582 - -3.5
2,517,582 - -1.6
2,517,582 - -3.4
2,517,582 - -2.9
2,517,582 - -3.1
2,517,582 - -2.8
2,517,582 - -3.8
2,517,582 - -1.6
2,517,672 + -1.2
2,517,673 - +0.1
2,517,673 - +0.5
2,517,673 - +0.7
2,517,959 + -2.9
2,517,959 + -2.4
2,517,960 - -4.3
2,517,960 - -2.2
2,517,960 - -4.1
2,517,960 - -5.5
2,517,960 - -1.6
2,518,004 + -2.3
2,518,004 + -3.1
2,518,004 + -5.1
2,518,004 + -0.6
2,518,005 - -0.6
2,518,005 - -2.7
2,518,216 - A4249_RS12555 0.23 -2.7
2,518,311 + A4249_RS12555 0.30 -3.8
2,518,311 + A4249_RS12555 0.30 -2.8
2,518,311 + A4249_RS12555 0.30 -1.2
2,518,311 + A4249_RS12555 0.30 -4.1
2,518,311 + A4249_RS12555 0.30 -3.9
2,518,311 + A4249_RS12555 0.30 -3.1
2,518,311 + A4249_RS12555 0.30 -5.4
2,518,312 - A4249_RS12555 0.30 -0.6
2,518,312 - A4249_RS12555 0.30 -4.3
2,518,312 - A4249_RS12555 0.30 -3.8
2,518,312 - A4249_RS12555 0.30 -2.4
2,518,322 + A4249_RS12555 0.31 -2.9
2,518,322 + A4249_RS12555 0.31 -2.2
2,518,323 - A4249_RS12555 0.31 -3.9
2,518,323 - A4249_RS12555 0.31 -2.8
2,518,420 - A4249_RS12555 0.38 -2.8
2,518,757 + A4249_RS12555 0.63 -4.5
2,518,757 + A4249_RS12555 0.63 -3.8
2,518,757 + A4249_RS12555 0.63 -4.5
2,518,757 + A4249_RS12555 0.63 -4.7
2,518,757 + A4249_RS12555 0.63 -4.8
2,518,757 + A4249_RS12555 0.63 -2.6
2,518,757 + A4249_RS12555 0.63 -3.6
2,518,757 + A4249_RS12555 0.63 -3.3
2,518,757 + A4249_RS12555 0.63 -3.4
2,518,757 + A4249_RS12555 0.63 -3.6
2,518,757 + A4249_RS12555 0.63 -3.2
2,518,757 + A4249_RS12555 0.63 -3.6
2,518,757 + A4249_RS12555 0.63 -4.3
2,518,757 + A4249_RS12555 0.63 -5.3
2,518,757 + A4249_RS12555 0.63 -3.6
2,518,758 - A4249_RS12555 0.63 +0.4
2,518,758 - A4249_RS12555 0.63 -0.6
2,518,758 - A4249_RS12555 0.63 -1.2
2,518,758 - A4249_RS12555 0.63 -2.4
2,518,758 - A4249_RS12555 0.63 -2.6
2,518,758 - A4249_RS12555 0.63 -3.4
2,518,758 - A4249_RS12555 0.63 -3.2
2,518,758 - A4249_RS12555 0.63 -1.6
2,518,758 - A4249_RS12555 0.63 -3.3
2,518,758 - A4249_RS12555 0.63 -4.4
2,518,758 - A4249_RS12555 0.63 -3.9
2,518,758 - A4249_RS12555 0.63 -3.4
2,518,758 - A4249_RS12555 0.63 -3.2
2,518,758 - A4249_RS12555 0.63 -3.1
2,519,427 + A4249_RS12560 0.14 +1.4
2,519,427 + A4249_RS12560 0.14 -0.8
2,519,428 - A4249_RS12560 0.14 +1.3
2,519,428 - A4249_RS12560 0.14 +0.5
2,519,428 - A4249_RS12560 0.14 +0.6
2,519,429 + A4249_RS12560 0.14 +0.3
2,519,429 + A4249_RS12560 0.14 +1.5
2,519,429 + A4249_RS12560 0.14 +1.0
2,519,429 + A4249_RS12560 0.14 +0.9
2,519,430 - A4249_RS12560 0.14 +0.8
2,519,430 - A4249_RS12560 0.14 -0.1
2,519,567 + A4249_RS12560 0.35 +1.3
2,519,705 + A4249_RS12560 0.55 +0.4
2,519,705 + A4249_RS12560 0.55 +0.7
2,519,705 + A4249_RS12560 0.55 -1.8
2,519,705 + A4249_RS12560 0.55 +0.8
2,519,705 + A4249_RS12560 0.55 -0.1
2,519,705 + A4249_RS12560 0.55 +0.8
2,519,705 + A4249_RS12560 0.55 +0.5
2,519,706 - A4249_RS12560 0.56 +0.5
2,519,706 - A4249_RS12560 0.56 +0.5
2,519,706 - A4249_RS12560 0.56 -0.9
2,519,706 - A4249_RS12560 0.56 +1.4
2,519,706 - A4249_RS12560 0.56 -0.3
2,519,706 - A4249_RS12560 0.56 +0.4
2,519,706 - A4249_RS12560 0.56 -1.3
2,519,813 + A4249_RS12560 0.72 +0.5
2,519,813 + A4249_RS12560 0.72 +0.3
2,519,813 + A4249_RS12560 0.72 -0.0
2,519,813 + A4249_RS12560 0.72 -1.6
2,519,813 + A4249_RS12560 0.72 +0.1
2,519,814 - A4249_RS12560 0.72 +0.2
2,519,814 - A4249_RS12560 0.72 -0.5
2,520,009 + +0.1
2,520,009 + -0.6
2,520,009 + +0.2
2,520,010 - -0.3
2,520,010 - -0.5

Or see this region's nucleotide sequence